RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA561138", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA561138 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3095904 3095904 PRJNA561138_P_NODE_11803_length_378_cov_0.970492_g11608_i0 PRJNA561138 11803 378 0.970492 3.66845976 Rubrivirga 1434037 Bacteria Bacteria 194 2.31e-59   NR WP_095511615.1 1196024 g11608 i0 72 7.86507936507936 125 35 99.2 0 376 2 149 273 WP_095511615.1 carbon-nitrogen hydrolase family protein [Rubrivirga marina] diamond 2973 194 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga marina
19671570 19671570 PRJNA561138_P_NODE_23176_length_262_cov_1.216931_g22981_i0 PRJNA561138 23176 262 1.216931 3.18835922 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 167 8.18e-37   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g22981 i0 80 35.9885496183206 235 40 89 6 11 243 1046430 1046659 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 9429 167 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
29794630 29794630 PRJNA561138_P_NODE_9951_length_405_cov_1.159639_g9756_i0 PRJNA561138 9951 405 1.159639 4.69653795 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 116 8.249999999999998e-30   NR MDX1419937.1 2838334 g9756 i0 59.6 0.733333333333333 99 36 70.4 1 121 405 26 124 MDX1419937.1 hypothetical protein [Rubricoccaceae bacterium] diamond 297 116 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;