RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA561138", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA561138 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6922947 6922947 PRJNA561138_P_NODE_11006_length_389_cov_0.974684_g10811_i0 PRJNA561138 11006 389 0.974684 3.79152076 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 209 4.77e-63   NR MCZ6857883.1 2026742 g10811 i0 69.8 1.98971722365039 129 39 99.5 0 389 3 143 271 MCZ6857883.1 cardiolipin synthase [Gemmatimonadota bacterium] diamond 774 209 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
20947276 20947276 PRJNA561138_P_NODE_26337_length_248_cov_0.880000_g26142_i0 PRJNA561138 26337 248 0.88 2.1824 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 169 2.13e-37   NTclustered gi|2108151088|gb|CP070722.1| 2026742 g26142 i0 83.784 0.745967741935484 185 23 74 7 52 234 1552974 1553153 MAG: Gemmatimonadetes bacterium isolate bin464 chromosome blastn 185 169 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27850991 27850991 PRJNA561138_P_NODE_11904_length_376_cov_1.290429_g11709_i0 PRJNA561138 11904 376 1.290429 4.85201304 Bacteria 2 Bacteria Bacteria 159 1.25e-45   NR NNE10403.1 2026742 g11709 i0 60.2 2.05851063829787 133 45 99.7 1 375 1 68 200 NNE10403.1 DUF4437 domain-containing protein [Gemmatimonadota bacterium] diamond 774 160 0.99375 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31659146 31659146 PRJNA561138_P_NODE_19337_length_295_cov_1.153153_g19142_i0 PRJNA561138 19337 295 1.153153 3.40180135 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 71.2 6.75e-12   NR MFN2317286.1 2448054 g19142 i0 40.2 0.986440677966102 97 58 98.6 0 1 291 422 518 MFN2317286.1 protein kinase [Gemmatimonadales bacterium] diamond 291 71.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;