RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA560932", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA560932 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26889446 26889446 PRJNA560932_P_NODE_58121_length_247_cov_0.885057_g57765_i0 PRJNA560932 58121 247 0.885057 2.18609079 Thermoprotei archaeon 2250277 Archaea Archaea 112 9.95e-27   NR RLF22639.1 2250277 g57765 i0 63.8 3.88663967611336 80 27 97.2 1 245 6 75 152 RLF22639.1 MAG: ribosome biogenesis/translation initiation ATPase RLI [Thermoprotei archaeon] diamond 960 112 1 Archaea   Thermoproteati Thermoproteota Thermoprotei       Thermoprotei archaeon
28215761 28215761 PRJNA560932_P_NODE_17786_length_417_cov_1.343023_g17430_i0 PRJNA560932 17786 417 1.343023 5.60040591 Vulcanisaeta moutnovskia 985052 Archaea Archaea 95.5 1.54e-20   NR WP_013604536.1 985052 g17430 i0 36.6 1.02158273381295 142 85 98.6 3 3 413 134 275 WP_013604536.1 polyamine aminopropyltransferase [Vulcanisaeta moutnovskia] diamond 426 95.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
30932156 30932156 PRJNA560932_P_NODE_42894_length_279_cov_1.189320_g42538_i0 PRJNA560932 42894 279 1.18932 3.3182028 Acidilobus saccharovorans 242703 Archaea Archaea 75.9 2.67e-15   NR WP_238523592.1 242703 g42538 i0 46.8 1.62365591397849 77 41 82.8 0 239 9 4 80 WP_238523592.1 peptidyl-tRNA hydrolase Pth2 [Acidilobus saccharovorans] diamond 453 75.9 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Acidilobales Acidilobaceae Acidilobus Acidilobus saccharovorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;