RNAquarium Metadata Server
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contig_metadata

22 rows where bioproject = "PRJNA560932" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 22 ✖

tax_clade 1

bioproject 1

  • PRJNA560932 · 22 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6922655 6922655 PRJNA560932_P_NODE_3686_length_880_cov_2.189591_g3402_i0 PRJNA560932 3686 880 2.189591 19.2684008 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 84.2 3.15e-11   NTclustered gi|154412934|ref|XM_001579449.1| 412133 g3402 i0 85.366 0.230681818181818 82 10 9 2 528 607 191 272 Trichomonas vaginalis G3 protein kinase protein (TVAGG3_0983640), partial mRNA blastn 203 84.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
13298613 13298613 PRJNA560932_P_NODE_23191_length_368_cov_1.566102_g22835_i0 PRJNA560932 23191 368 1.566102 5.76325536 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 54.7 0.01   NTclustered gi|123505775|ref|XM_001329021.1| 412133 g22835 i0 100 0.611413043478261 29 0 8 0 26 54 736 764 Trichomonas vaginalis G3 ribosomal protein S6 kinase family (TVAGG3_1000460), partial mRNA blastn 225 54.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
20946616 20946616 PRJNA560932_P_NODE_13617_length_474_cov_1.593516_g13262_i0 PRJNA560932 13617 474 1.593516 7.55326584 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 250 1.5099999999999995e-82   NR XP_001322019.1 412133 g13262 i0 80.1 0.924050632911392 146 28 92.4 1 440 3 2 146 XP_001322019.1 peptidyl-prolyl cis-trans isomerase protein [Trichomonas vaginalis G3] diamond 438 250 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
24770916 24770916 PRJNA560932_P_NODE_33260_length_314_cov_1.917012_g32904_i0 PRJNA560932 33260 314 1.917012 6.01941768 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 65.8 3.77e-6   NTclustered gi|2319615616|ref|XR_007835995.1| 412133 g32904 i0 90.385 0.74203821656051006 52 2 16 3 170 220 2610 2561 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034210), rRNA blastn 233 65.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
26744447 26744447 PRJNA560932_P_NODE_19741_length_396_cov_2.238390_g19385_i0 PRJNA560932 19741 396 2.23839 8.8640244 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 49.3 6.23e-4   NR XP_067772368.1 135588 g19385 i0 32 1.17424242424242 75 51 56.8 0 226 2 32 106 XP_067772368.1 Signal recognition particle receptor subunit beta [Histomonas meleagridis] diamond 465 49.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27251006 27251006 PRJNA560932_P_NODE_64743_length_242_cov_1.544379_g64387_i0 PRJNA560932 64743 242 1.544379 3.73739718 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 57.4 2.33e-7   NR XP_001330129.1 412133 g64387 i0 37.5 8.75206611570248 64 40 79.3 0 235 44 122 185 XP_001330129.1 protein serine/threonine kinase protein [Trichomonas vaginalis G3] diamond 2118 57.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27742694 27742694 PRJNA560932_P_NODE_17004_length_426_cov_1.960340_g16648_i0 PRJNA560932 17004 426 1.96034 8.3510484 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 109 1.7500000000000002e-26   NR XP_067773722.1 135588 g16648 i0 42.1 0.985915492957746 140 72 97.9 3 9 425 40 171 XP_067773722.1 Ubiquitin-conjugating enzyme family protein [Histomonas meleagridis] diamond 420 109 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27774205 27774205 PRJNA560932_P_NODE_66364_length_241_cov_0.916667_g66008_i0 PRJNA560932 66364 241 0.916667 2.20916747 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 43.5 0.0153   NR XP_068359286.1 1144522 g66008 i0 39.3 1.33195020746888 56 30 66 2 27 185 3 57 XP_068359286.1 uncharacterized protein TRFO_25945 [Tritrichomonas foetus] diamond 321 43.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28058095 28058095 PRJNA560932_P_NODE_30285_length_328_cov_1.070588_g29929_i0 PRJNA560932 30285 328 1.070588 3.51152864 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 67.4 8.06e-11   NR XP_067772684.1 135588 g29929 i0 46.6 0.667682926829268 73 37 64.9 2 223 11 68 140 XP_067772684.1 Ubiquitin-conjugating enzyme family protein [Histomonas meleagridis] diamond 219 67.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
28247437 28247437 PRJNA560932_P_NODE_3886_length_863_cov_1.712658_g3599_i0 PRJNA560932 3886 863 1.712658 14.78023854 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 132 1e-30   NR XP_068361143.1 1144522 g3599 i0 31.4 0.917728852838934 264 166 89.3 7 10 780 499 754 XP_068361143.1 uncharacterized protein TRFO_23625 [Tritrichomonas foetus] diamond 792 132 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28261361 28261361 PRJNA560932_P_NODE_20366_length_390_cov_1.817035_g20010_i0 PRJNA560932 20366 390 1.817035 7.0864365 Cryptophyceae 3027 Parabasalia other_Eukaryota 90.9 2.74e-18   NR XP_068360207.1 1144522 g20010 i0 43 4.85384615384615 128 70 98.5 1 5 388 648 772 XP_068360207.1 Cell division cycle protein 48 like protein [Tritrichomonas foetus] diamond 1893 91.7 0.991275899672846 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28595108 28595108 PRJNA560932_P_NODE_9827_length_556_cov_1.275362_g9473_i0 PRJNA560932 9827 556 1.275362 7.09101272 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 69.3 5.08e-10   NR XP_001330280.1 412133 g9473 i0 32.4 2.66007194244604 173 86 88.5 7 6 497 47 197 XP_001330280.1 EF-Hand calcium-binding domain-containing protein 6-related family [Trichomonas vaginalis G3] diamond 1479 69.3 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28689884 28689884 PRJNA560932_P_NODE_56767_length_248_cov_0.880000_g56411_i0 PRJNA560932 56767 248 0.88 2.1824 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 43.1 0.0261   NR XP_001320595.1 412133 g56411 i0 38.6 0.532258064516129 44 27 53.2 0 1 132 29 72 XP_001320595.1 RNA polymerase II transcription regulator recruiting protein [Trichomonas vaginalis G3] diamond 132 43.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28784138 28784138 PRJNA560932_P_NODE_10907_length_527_cov_1.784141_g10553_i0 PRJNA560932 10907 527 1.784141 9.40242307 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 90.9 3.85e-19   NR XP_067769600.1 135588 g10553 i0 39.7 0.74573055028463 131 78 74.6 1 429 37 35 164 XP_067769600.1 ras-related protein Rab-8B [Histomonas meleagridis] diamond 393 90.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
28784215 28784215 PRJNA560932_P_NODE_64027_length_243_cov_0.905882_g63671_i0 PRJNA560932 64027 243 0.905882 2.20129326 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 42.7 0.0372   NR XP_067775230.1 135588 g63671 i0 39.2 0.62962962962963 51 31 63 0 199 47 300 350 XP_067775230.1 Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase [Histomonas meleagridis] diamond 153 42.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
28942443 28942443 PRJNA560932_P_NODE_16088_length_438_cov_1.054795_g15732_i0 PRJNA560932 16088 438 1.054795 4.6200021 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 47 0.00917   NR XP_068348748.1 1144522 g15732 i0 41.3 0.315068493150685 46 27 31.5 0 297 160 219 264 XP_068348748.1 Sec1 family protein [Tritrichomonas foetus] diamond 138 47 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
29226610 29226610 PRJNA560932_P_NODE_229_length_2215_cov_3.514006_g83_i3 PRJNA560932 229 2215 3.514006 77.8352329 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 123 1.22e-24   NR EAY10953.1 412133 g83 i3 26.3 0.747629796839729 552 302 64.9 18 2213 777 733 1252 EAY10953.1 C2 domain containing protein, partial [Trichomonas vaginalis G3] diamond 1656 123 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29524603 29524603 PRJNA560932_P_NODE_32510_length_318_cov_0.934694_g32154_i0 PRJNA560932 32510 318 0.934694 2.97232692 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 55.8 2.35e-6   NR XP_001327067.1 412133 g32154 i0 29.5 5.65094339622642 95 67 89.6 0 10 294 388 482 XP_001327067.1 spectrin binding [Trichomonas vaginalis G3] diamond 1797 56.2 0.99288256227758 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30788104 30788104 PRJNA560932_P_NODE_10634_length_535_cov_1.419913_g10280_i0 PRJNA560932 10634 535 1.419913 7.59653455 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 164 2.26e-43   NR XP_067779618.1 135588 g10280 i0 51.1 2.97196261682243 176 79 98.7 3 534 7 665 833 XP_067779618.1 glycogen phosphorylase [Histomonas meleagridis] diamond 1590 164 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
31279592 31279592 PRJNA560932_P_NODE_155_length_2456_cov_3.828368_g83_i2 PRJNA560932 155 2456 3.828368 94.02471808 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 132 2.24e-27   NR EAY10953.1 412133 g83 i2 26.3 0.697475570032573 571 316 60.8 18 2270 777 714 1252 EAY10953.1 C2 domain containing protein, partial [Trichomonas vaginalis G3] diamond 1713 132 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32260726 32260726 PRJNA560932_P_NODE_64098_length_243_cov_0.905882_g63742_i0 PRJNA560932 64098 243 0.905882 2.20129326 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 108 9.48e-28   NR XP_067770659.1 135588 g63742 i0 58.8 0.987654320987654 80 33 98.8 0 1 240 65 144 XP_067770659.1 Thymidylate kinase [Histomonas meleagridis] diamond 240 108 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
32482014 32482014 PRJNA560932_P_NODE_38679_length_292_cov_1.456621_g38323_i0 PRJNA560932 38679 292 1.456621 4.25333332 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 79.7 5.86e-15   NR XP_001309651.1 412133 g38323 i0 47 6.76027397260274 83 40 85.3 2 269 21 92 170 XP_001309651.1 protein kinase protein [Trichomonas vaginalis G3] diamond 1974 79.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;