RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA560932" and tax_phylum = "Fidelibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA560932 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27503992 27503992 PRJNA560932_P_NODE_37303_length_298_cov_0.880000_g36947_i0 PRJNA560932 37303 298 0.88 2.6224 Pseudomonadati 3379134 Bacteria Bacteria 95.5 1.27e-22   NR GIT40515.1 2026760 g36947 i0 48.1 8.98993288590604 106 48 99.7 1 1 297 20 125 GIT40515.1 MAG: hypothetical protein Ct9H300mP9_3650 [Fidelibacterota bacterium] diamond 2679 96.3 0.991692627206646 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
27995112 27995112 PRJNA560932_P_NODE_53805_length_250_cov_0.870056_g53449_i0 PRJNA560932 53805 250 0.870056 2.17514 Fidelibacterota bacterium 2026760 Bacteria Bacteria 69.3 6.06e-12   NR MBC8174918.1 2026760 g53449 i0 38 0.948 79 42 86.4 1 35 250 19 97 MBC8174918.1 SOS response-associated peptidase [Fidelibacterota bacterium] diamond 237 69.3 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
28437218 28437218 PRJNA560932_P_NODE_67406_length_241_cov_0.916667_g67050_i0 PRJNA560932 67406 241 0.916667 2.20916747 Fidelibacterota bacterium 2026760 Bacteria Bacteria 47.4 6.23e-4   NR HIF28430.1 2026760 g67050 i0 29.3 0.933609958506224 75 51 90.9 2 226 8 24 98 HIF28430.1 hypothetical protein [Fidelibacterota bacterium] diamond 225 47.4 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
29352840 29352840 PRJNA560932_P_NODE_61029_length_245_cov_0.895349_g60673_i0 PRJNA560932 61029 245 0.895349 2.19360505 Fidelibacterota bacterium 2026760 Bacteria Bacteria 50.1 5.46e-5   NR MDB3868675.1 2026760 g60673 i0 56.1 0.502040816326531 41 17 50.2 1 245 123 77 116 MDB3868675.1 3-deoxy-7-phosphoheptulonate synthase [Fidelibacterota bacterium] diamond 123 50.1 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
32165696 32165696 PRJNA560932_P_NODE_66478_length_241_cov_0.916667_g66122_i0 PRJNA560932 66478 241 0.916667 2.20916747 Fidelibacterota bacterium 2026760 Bacteria Bacteria 98.2 9.12e-22   NR MDP7608959.1 2026760 g66122 i0 61.6 0.908713692946058 73 25 89.6 2 23 238 18 88 MDP7608959.1 methylenetetrahydrofolate reductase [Fidelibacterota bacterium] diamond 219 98.2 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;