RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where bioproject = "PRJNA560932", tax_clade = "Sar" and tax_phylum = "Foraminifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 18 ✖

tax_clade 1

  • Sar · 18 ✖

bioproject 1

  • PRJNA560932 · 18 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1820470 1820470 PRJNA560932_P_NODE_51602_length_252_cov_1.139665_g51246_i0 PRJNA560932 51602 252 1.139665 2.8719558 root 1 Root_unresolved Root_unresolved 88.6 9.72e-19   NR ETO10361.1 46433 g51246 i0 51.3 4.69047619047619 78 38 92.9 0 244 11 83 160 ETO10361.1 hypothetical protein RFI_27015 [Reticulomyxa filosa] diamond 1182 88.6 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
9473186 9473186 PRJNA560932_P_NODE_27748_length_341_cov_0.828358_g27392_i0 PRJNA560932 27748 341 0.828358 2.82470078 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 132 1.01e-33   NR ETO30355.1 46433 g27392 i0 54 23.8504398826979 113 52 99.4 0 339 1 252 364 ETO30355.1 hypothetical protein RFI_06765, partial [Reticulomyxa filosa] diamond 8133 132 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
12023851 12023851 PRJNA560932_P_NODE_48490_length_262_cov_0.936508_g48134_i0 PRJNA560932 48490 262 0.936508 2.45365096 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 134 3.11e-34   NR ETO16925.1 46433 g48134 i0 73 16.0763358778626 89 22 99.6 1 261 1 487 575 ETO16925.1 hypothetical protein RFI_20413 [Reticulomyxa filosa] diamond 4212 134 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
22221734 22221734 PRJNA560932_P_NODE_34618_length_309_cov_0.978814_g34262_i0 PRJNA560932 34618 309 0.978814 3.02453526 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 68.2 4.94e-11   NR ETO15384.1 46433 g34262 i0 41.9 0.83495145631068 86 45 80.6 2 249 1 132 215 ETO15384.1 alkylated DNA repair protein [Reticulomyxa filosa] diamond 258 68.2 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27598692 27598692 PRJNA560932_P_NODE_33224_length_314_cov_3.468880_g32868_i0 PRJNA560932 33224 314 3.46888 10.8922832 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 112 2.79e-27   NR ETO22507.1 46433 g32868 i0 63.9 5.47452229299363 83 27 79.3 1 36 284 35 114 ETO22507.1 mitochondrial dicarboxylate carrier protein [Reticulomyxa filosa] diamond 1719 112 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27693515 27693515 PRJNA560932_P_NODE_28224_length_338_cov_1.162264_g27868_i0 PRJNA560932 28224 338 1.162264 3.92845232 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 74.3 8.77e-13   NR ETO01289.1 46433 g27868 i0 39.8 3.04437869822485 123 51 92.3 3 337 26 192 310 ETO01289.1 hypothetical protein RFI_36155 [Reticulomyxa filosa] diamond 1029 74.7 0.994645247657296 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27995124 27995124 PRJNA560932_P_NODE_63205_length_243_cov_2.711765_g62849_i0 PRJNA560932 63205 243 2.711765 6.5895889499999996 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 98.6 1.42e-22   NR ETO23439.1 46433 g62849 i0 51.3 0.962962962962963 78 37 95.1 1 242 12 28 105 ETO23439.1 flagellar WD repeat protein PF20, partial [Reticulomyxa filosa] diamond 234 98.6 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28103539 28103539 PRJNA560932_P_NODE_48885_length_260_cov_1.647059_g48529_i0 PRJNA560932 48885 260 1.647059 4.2823534 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 94 4.36e-20   NR ETO33242.1 46433 g48529 i0 51.7 5.26153846153846 87 41 99.2 1 258 1 278 364 ETO33242.1 hypothetical protein RFI_03863 [Reticulomyxa filosa] diamond 1368 94.7 0.992608236536431 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28987994 28987994 PRJNA560932_P_NODE_46688_length_267_cov_1.587629_g46332_i0 PRJNA560932 46688 267 1.587629 4.23896943 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 59.3 7.03e-8   NR ETO11912.1 46433 g46332 i0 51 1.92134831460674 49 19 53.9 2 122 265 29 73 ETO11912.1 hypothetical protein RFI_25461 [Reticulomyxa filosa] diamond 513 59.7 0.993299832495812 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29478685 29478685 PRJNA560932_P_NODE_21490_length_381_cov_1.133117_g21134_i0 PRJNA560932 21490 381 1.133117 4.31717577 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 63.5 9.49e-10   NR ETO27885.1 46433 g21134 i0 36.6 0.795275590551181 101 62 78.7 2 2 301 27 126 ETO27885.1 hypothetical protein RFI_09247 [Reticulomyxa filosa] diamond 303 63.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
30061198 30061198 PRJNA560932_P_NODE_31971_length_320_cov_1.246964_g31615_i0 PRJNA560932 31971 320 1.246964 3.9902848 root 1 Root_unresolved Root_unresolved 114 2e-27   NR ETO10579.1 46433 g31615 i0 60.9 6.346875 87 34 81.6 0 2 262 321 407 ETO10579.1 hypothetical protein RFI_26798 [Reticulomyxa filosa] diamond 2031 114 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
30472255 30472255 PRJNA560932_P_NODE_30233_length_328_cov_1.207843_g29877_i0 PRJNA560932 30233 328 1.207843 3.96172504 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 72.8 4.61e-13   NR ETO17561.1 46433 g29877 i0 50 5.89939024390244 76 37 68.6 1 301 77 105 180 ETO17561.1 hypothetical protein RFI_19759 [Reticulomyxa filosa] diamond 1935 73.2 0.994535519125683 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31027052 31027052 PRJNA560932_P_NODE_37755_length_296_cov_1.372197_g37399_i0 PRJNA560932 37755 296 1.3721969999999999 4.06170312 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 98.6 1.7699999999999998e-23   NR ETO27122.1 46433 g37399 i0 50.5 0.983108108108108 97 46 96.3 2 7 291 10 106 ETO27122.1 citrate synthase [Reticulomyxa filosa] diamond 291 98.6 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31325273 31325273 PRJNA560932_P_NODE_44935_length_273_cov_0.985000_g44579_i0 PRJNA560932 44935 273 0.985 2.68905 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 91.7 5.6e-21   NR ETO31342.1 46433 g44579 i0 45.6 2.94505494505495 90 49 98.9 0 272 3 36 125 ETO31342.1 histone acetyltransferase Gcn5, partial [Reticulomyxa filosa] diamond 804 91.7 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31831202 31831202 PRJNA560932_P_NODE_33537_length_313_cov_1.604167_g33181_i0 PRJNA560932 33537 313 1.604167 5.02104271 root 1 Root_unresolved Root_unresolved 64.7 1.5e-9   NR ETO25763.1 46433 g33181 i0 47.7 2.33865814696486 65 31 59.4 1 284 99 78 142 ETO25763.1 G-protein beta WD-40 repeats containing protein [Reticulomyxa filosa] diamond 732 64.7 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31849060 31849060 PRJNA560932_P_NODE_9837_length_555_cov_2.863071_g9483_i0 PRJNA560932 9837 555 2.863071 15.89004405 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 229 3.38e-68   NR ETO35216.1 46433 g9483 i0 61.3 1.00540540540541 186 67 98.9 3 553 5 174 357 ETO35216.1 coagulation factor 5/8 type domain-containing protein [Reticulomyxa filosa] diamond 558 229 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
32070553 32070553 PRJNA560932_P_NODE_60138_length_246_cov_0.890173_g59782_i0 PRJNA560932 60138 246 0.890173 2.18982558 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 109 5.62e-27   NR ETO14107.1 46433 g59782 i0 51.6 1.13414634146341 93 31 96.3 2 3 239 187 279 ETO14107.1 hypothetical protein RFI_23263 [Reticulomyxa filosa] diamond 279 109 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
32671077 32671077 PRJNA560932_P_NODE_3560_length_896_cov_2.187120_g3280_i0 PRJNA560932 3560 896 2.18712 19.5965952 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 307 2.889999999999999e-96   NR ETO35216.1 46433 g3280 i0 53.4 2.9765625 305 125 96.8 4 894 28 344 647 ETO35216.1 coagulation factor 5/8 type domain-containing protein [Reticulomyxa filosa] diamond 2667 307 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;