RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA560932", tax_clade = "Pithoviruses" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Viruses · 2 ✖

tax_clade 1

  • Pithoviruses · 2 ✖

bioproject 1

  • PRJNA560932 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26730450 26730450 PRJNA560932_P_NODE_4721_length_787_cov_3.131653_g4401_i0 PRJNA560932 4721 787 3.131653 24.64610911 Cedratvirus Ce2-1 3068400 Viruses Viruses 119 7.84e-27   NR GMQ13046.1 3068400 g4401 i0 35.7 1.57433290978399 213 114 77 7 28 633 220 420 GMQ13046.1 Purine phosphorylase family 1 protein [Cedratvirus Ce2-1] diamond 1239 119 1 Viruses Pithoviruses             Cedratvirus Ce2-1
31469715 31469715 PRJNA560932_P_NODE_56976_length_248_cov_0.880000_g56620_i0 PRJNA560932 56976 248 0.88 2.1824 Solumvirus sp. 2487773 Viruses Viruses 69.7 1.19e-11   NR AYV86228.1 2487773 g56620 i0 59.6 0.689516129032258 57 23 69 0 205 35 335 391 AYV86228.1 MAG: hypothetical protein Solumvirus2_35 [Solumvirus sp.] diamond 171 69.7 1 Viruses Pithoviruses             Solumvirus sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;