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contig_metadata

24 rows where bioproject = "PRJNA560932", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 24 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 24 ✖

bioproject 1

  • PRJNA560932 · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14573382 14573382 PRJNA560932_P_NODE_12412_length_496_cov_0.820331_g12058_i0 PRJNA560932 12412 496 0.820331 4.06884176 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 125 1.39e-30   NR HMA40046.1 2448054 g12058 i0 52.3 3.82862903225806 111 53 67.1 0 335 3 3 113 HMA40046.1 aspartate aminotransferase family protein [Gemmatimonadales bacterium] diamond 1899 125 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
20946935 20946935 PRJNA560932_P_NODE_48877_length_260_cov_1.647059_g48521_i0 PRJNA560932 48877 260 1.647059 4.2823534 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 414 2.62e-111   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g48521 i0 95.385 197.096153846154 260 12 100 0 1 260 2074984 2074725 Gemmatimonas phototrophica strain AP64, complete genome blastn 51245 414 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
27047402 27047402 PRJNA560932_P_NODE_1582_length_1233_cov_2.306034_g1413_i0 PRJNA560932 1582 1233 2.306034 28.43339922 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 75.5 1.95e-12   NR MDQ3556889.1 2026742 g1413 i0 37.8 0.781021897810219 98 61 23.8 0 831 1124 4 101 MDQ3556889.1 30S ribosomal protein S9 [Gemmatimonadota bacterium] diamond 963 75.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27426896 27426896 PRJNA560932_P_NODE_54543_length_250_cov_0.870056_g54187_i0 PRJNA560932 54543 250 0.870056 2.17514 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 48.1 3.05e-4   NR CAA9297862.1 246130 g54187 i0 39.2 2.724 74 43 86.4 1 220 5 46 119 CAA9297862.1 MAG: Methanol dehydrogenase large subunit protein [uncultured Gemmatimonadaceae bacterium] diamond 681 48.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
27647809 27647809 PRJNA560932_P_NODE_15904_length_440_cov_1.621253_g15549_i0 PRJNA560932 15904 440 1.621253 7.1335132 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 85.1 4.46e-17   NR HEX3276166.1 2448054 g15549 i0 37 0.940909090909091 138 79 92 3 11 415 6 138 HEX3276166.1 aquaporin [Gemmatimonadales bacterium] diamond 414 85.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27900119 27900119 PRJNA560932_P_NODE_54865_length_249_cov_1.136364_g54509_i0 PRJNA560932 54865 249 1.136364 2.82954636 Longimicrobiales bacterium 2910168 Bacteria Bacteria 60.1 3.09e-8   NR HET9985637.1 2910168 g54509 i0 37.8 4.8433734939759 82 46 96.4 2 244 5 424 502 HET9985637.1 glutamine--tRNA ligase/YqeY domain fusion protein [Longimicrobiales bacterium] diamond 1206 60.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
28026688 28026688 PRJNA560932_P_NODE_27005_length_345_cov_0.849265_g26649_i0 PRJNA560932 27005 345 0.849265 2.92996425 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 57.4 7.62e-7   NR HEY0970368.1 2448054 g26649 i0 39.5 1.75652173913043 86 46 74.8 1 303 46 42 121 HEY0970368.1 heme ABC transporter ATP-binding protein [Gemmatimonadales bacterium] diamond 606 57.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28531950 28531950 PRJNA560932_P_NODE_61547_length_245_cov_0.895349_g61191_i0 PRJNA560932 61547 245 0.895349 2.19360505 Longimicrobium sp. 2029185 Bacteria Bacteria 42.4 0.0481   NR HEU0053638.1 2029185 g61191 i0 43.3 0.73469387755102 60 31 73.5 2 57 236 114 170 HEU0053638.1 LytTR family DNA-binding domain-containing protein [Longimicrobium sp.] diamond 180 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
28595023 28595023 PRJNA560932_P_NODE_15507_length_445_cov_1.602151_g15152_i0 PRJNA560932 15507 445 1.602151 7.12957195 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 45.8 0.0189   NR NNK49592.1 2026742 g15152 i0 37.3 0.559550561797753 83 44 56 1 96 344 184 258 NNK49592.1 FkbM family methyltransferase [Gemmatimonadota bacterium] diamond 249 45.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28910346 28910346 PRJNA560932_P_NODE_34188_length_310_cov_2.367089_g33832_i0 PRJNA560932 34188 310 2.367089 7.3379759 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 61.2 2.68e-8   NR HZI99252.1 2026741 g33832 i0 45.5 0.745161290322581 77 37 73.5 3 83 310 724 796 HZI99252.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 231 61.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29005827 29005827 PRJNA560932_P_NODE_6828_length_662_cov_1.740238_g6477_i0 PRJNA560932 6828 662 1.740238 11.52037556 Longimicrobium sp. 2029185 Bacteria Bacteria 53.9 1.13e-4   NR HEX2078858.1 2029185 g6477 i0 66.7 0.176737160120846 39 13 17.7 0 119 3 137 175 HEX2078858.1 DUF2382 domain-containing protein [Longimicrobium sp.] diamond 117 53.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29352793 29352793 PRJNA560932_P_NODE_3049_length_955_cov_1.980726_g2783_i0 PRJNA560932 3049 955 1.980726 18.9159333 Longimicrobium sp. 2029185 Bacteria Bacteria 97.4 1.68e-19   NR HEX2210215.1 2029185 g2783 i0 47.4 0.76020942408377 114 59 35.5 1 775 437 135 248 HEX2210215.1 DUF2382 domain-containing protein [Longimicrobium sp.] diamond 726 97.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29447234 29447234 PRJNA560932_P_NODE_60610_length_245_cov_0.895349_g60254_i0 PRJNA560932 60610 245 0.895349 2.19360505 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 44.7 0.00668   NR MCA9738193.1 2026742 g60254 i0 39.1 0.783673469387755 64 36 78.4 1 194 3 3 63 MCA9738193.1 tetratricopeptide repeat protein [Gemmatimonadota bacterium] diamond 192 44.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29857812 29857812 PRJNA560932_P_NODE_24971_length_356_cov_1.356890_g24615_i0 PRJNA560932 24971 356 1.35689 4.8305284 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 68.6 9.58e-11   NR HXV15547.1 2026741 g24615 i0 37.1 4.3314606741573 105 53 86.8 2 351 43 102 195 HXV15547.1 alpha/beta fold hydrolase [Gemmatimonadaceae bacterium] diamond 1542 68.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29889585 29889585 PRJNA560932_P_NODE_17611_length_419_cov_1.653179_g17255_i0 PRJNA560932 17611 419 1.653179 6.92682001 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 137 1.18e-34   NR NNE08319.1 2026742 g17255 i0 46.4 1.00238663484487 140 67 99.5 3 419 3 205 337 NNE08319.1 T9SS type A sorting domain-containing protein [Gemmatimonadota bacterium] diamond 420 137 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30141792 30141792 PRJNA560932_P_NODE_32272_length_319_cov_0.939024_g31916_i0 PRJNA560932 32272 319 0.939024 2.99548656 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 42.7 0.0344   NR MBY0492105.1 2026741 g31916 i0 39 0.554858934169279 59 34 53.6 2 187 17 2 60 MBY0492105.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 177 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30647462 30647462 PRJNA560932_P_NODE_22233_length_375_cov_1.887417_g21877_i0 PRJNA560932 22233 375 1.887417 7.07781375 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 45.4 0.0172   NR MBA3556131.1 2448054 g21877 i0 35.8 0.96 120 52 76 5 76 360 106 225 MBA3556131.1 sugar ABC transporter ATP-binding protein [Gemmatimonadales bacterium] diamond 360 45.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30679183 30679183 PRJNA560932_P_NODE_67053_length_241_cov_0.916667_g66697_i0 PRJNA560932 67053 241 0.916667 2.20916747 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 91.3 2.23e-19   NR MEK7667633.1 2026742 g66697 i0 56.4 0.970954356846473 78 34 97.1 0 8 241 116 193 MEK7667633.1 MFS transporter [Gemmatimonadota bacterium] diamond 234 91.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30742485 30742485 PRJNA560932_P_NODE_23254_length_368_cov_1.006780_g22898_i0 PRJNA560932 23254 368 1.00678 3.7049504 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 45.4 0.016   NR MBT7549682.1 2026742 g22898 i0 29.5 0.855978260869565 105 64 82.3 3 50 352 10 108 MBT7549682.1 sigma 54-interacting transcriptional regulator [Gemmatimonadota bacterium] diamond 315 45.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31483708 31483708 PRJNA560932_P_NODE_42036_length_282_cov_0.851675_g41680_i0 PRJNA560932 42036 282 0.851675 2.4017235 Gemmatimonas 173479 Bacteria Bacteria 77.4 3.74e-14   NR WP_291155774.1 1946568 g41680 i0 43 6.97872340425532 93 51 98.9 2 281 3 346 436 WP_291155774.1 leishmanolysin-related zinc metalloendopeptidase [Gemmatimonas sp. UBA7669] diamond 1968 77.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp. UBA7669
31880545 31880545 PRJNA560932_P_NODE_65177_length_242_cov_0.911243_g64821_i0 PRJNA560932 65177 242 0.911243 2.20520806 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 54.3 2.79e-6   NR HET9465852.1 2448054 g64821 i0 69.7 0.409090909090909 33 10 40.9 0 9 107 108 140 HET9465852.1 ferrochelatase [Gemmatimonadales bacterium] diamond 99 54.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32324028 32324028 PRJNA560932_P_NODE_46499_length_268_cov_1.184615_g46143_i0 PRJNA560932 46499 268 1.184615 3.1747682 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 43.9 0.0191   NR HEY3280245.1 2448054 g46143 i0 31.4 2.59701492537313 86 57 96.3 1 7 264 115 198 HEY3280245.1 putative glycoside hydrolase [Gemmatimonadales bacterium] diamond 696 43.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32369516 32369516 PRJNA560932_P_NODE_53319_length_250_cov_1.305085_g52963_i0 PRJNA560932 53319 250 1.305085 3.2627125 Bacteria 2 Bacteria Bacteria 119 7.249999999999998e-30   NR MFQ5746996.1 2026742 g52963 i0 68.3 3.9 82 26 98.4 0 246 1 286 367 MFQ5746996.1 inorganic phosphate transporter [Gemmatimonadota bacterium] diamond 975 120 0.991666666666667 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32765561 32765561 PRJNA560932_P_NODE_3180_length_939_cov_1.740185_g2911_i0 PRJNA560932 3180 939 1.740185 16.34033715 Gemmatirosa sp. 2510638 Bacteria Bacteria 85.1 7.34e-15   NR HZF66933.1 2510638 g2911 i0 39.8 1.12460063897764 123 73 39.3 1 550 918 162 283 HZF66933.1 DUF2382 domain-containing protein [Gemmatirosa sp.] diamond 1056 85.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;