RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA560932", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA560932 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27945854 27945854 PRJNA560932_P_NODE_45405_length_271_cov_1.555556_g45049_i0 PRJNA560932 45405 271 1.555556 4.21555676 Pseudomonadati 3379134 Bacteria Bacteria 62.4 6.23e-9   NR MBI2425232.1 2030809 g45049 i0 34.1 4.81549815498155 88 58 97.4 0 2 265 322 409 MBI2425232.1 aspartate aminotransferase family protein [Candidatus Hydrogenedentota bacterium] diamond 1305 62.4 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
29100164 29100164 PRJNA560932_P_NODE_24308_length_360_cov_1.787456_g23952_i0 PRJNA560932 24308 360 1.787456 6.4348416 Candidatus Hydrogenedentes bacterium ADurb.Bin179 1852849 Bacteria Bacteria 52.8 3.81e-5   NR OQB35213.1 1852849 g23952 i0 32.3 0.825 99 65 82.5 1 60 356 44 140 OQB35213.1 MAG: hypothetical protein BWY09_02393 [Candidatus Hydrogenedentes bacterium ADurb.Bin179] diamond 297 52.8 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentes bacterium ADurb.Bin179
30015975 30015975 PRJNA560932_P_NODE_47451_length_265_cov_1.203125_g47095_i0 PRJNA560932 47451 265 1.203125 3.18828125 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 62.8 2.38e-9   NR MBN2310629.1 2030809 g47095 i0 44.8 0.758490566037736 67 30 75.8 1 263 63 40 99 MBN2310629.1 ZIP family metal transporter [Candidatus Hydrogenedentota bacterium] diamond 201 62.8 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
31532933 31532933 PRJNA560932_P_NODE_23636_length_365_cov_1.489726_g23280_i0 PRJNA560932 23636 365 1.489726 5.4374999 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 82 5.81e-16   NR HOF38684.1 2030809 g23280 i0 36 0.936986301369863 114 73 93.7 0 344 3 74 187 HOF38684.1 SDR family oxidoreductase [Candidatus Hydrogenedentota bacterium] diamond 342 82 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;