RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA560932", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 10 ✖

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA560932 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6922770 6922770 PRJNA560932_P_NODE_51486_length_252_cov_1.418994_g51130_i0 PRJNA560932 51486 252 1.418994 3.57586488 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 303 5.71e-78   NTclustered gi|345452574|gb|JF694305.1| 1078836 g51130 i0 95.288 75.6468253968254 191 9 100 0 1 191 266 456 Cryptodifflugia operculata clone 9 actin gene, partial cds blastn 19063 303 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
6922784 6922784 PRJNA560932_P_NODE_53166_length_250_cov_1.740113_g52810_i0 PRJNA560932 53166 250 1.740113 4.3502825 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 106 1.71e-18   NTclustered gi|300078497|gb|GU001159.1| 200886 g52810 i0 86 29.772 100 12 40 2 3 101 4227 4325 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7443 106 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
13884422 13884422 PRJNA560932_P_NODE_56571_length_248_cov_0.880000_g56215_i0 PRJNA560932 56571 248 0.88 2.1824 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 122 1.69e-23   NTclustered gi|909719647|gb|KT185627.1| 5778 g56215 i0 83.582 40.8951612903226 134 18 54 4 1 133 27646 27776 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 10142 122 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19671271 19671271 PRJNA560932_P_NODE_5236_length_748_cov_1.588148_g4907_i0 PRJNA560932 5236 748 1.588148 11.87934704 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 981 0   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g4907 i0 90.483 35.966577540107 746 68 99 3 1 744 2243 2987 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 26903 981 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
20946902 20946902 PRJNA560932_P_NODE_44297_length_275_cov_1.024752_g43941_i0 PRJNA560932 44297 275 1.024752 2.818068 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 475 1.2699999999999996e-129   NTclustered gi|345452562|gb|JF694299.1| 1078836 g43941 i0 97.818 90.2 275 6 100 0 1 275 402 676 Cryptodifflugia operculata clone 3 actin gene, partial cds blastn 24805 475 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
24771111 24771111 PRJNA560932_P_NODE_6060_length_699_cov_1.292332_g5718_i0 PRJNA560932 6060 699 1.292332 9.03340068 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 1031 0   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g5718 i0 93.419 21.2718168812589 699 40 100 5 1 699 4436 3744 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14869 1031 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
26952311 26952311 PRJNA560932_P_NODE_42982_length_279_cov_0.912621_g42626_i0 PRJNA560932 42982 279 0.912621 2.54621259 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 149 1.14e-41   NR ABD46603.1 5778 g42626 i0 68.5 0.989247311827957 92 29 98.9 0 278 3 96 187 ABD46603.1 glycogen debranching enzyme, partial [Vermamoeba vermiformis] diamond 276 149 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30710901 30710901 PRJNA560932_P_NODE_3574_length_894_cov_8.909866_g3294_i0 PRJNA560932 3574 894 8.909866 79.65420204 Amoeba proteus 5775 Tubulinea other_Eukaryota 48.5 0.0169   NR AKN09692.1 5775 g3294 i0 23.7 0.76510067114094 228 166 74.8 4 14 682 3 227 AKN09692.1 Tom40 [Amoeba proteus] diamond 684 48.5 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
31090069 31090069 PRJNA560932_P_NODE_3555_length_896_cov_13.113001_g3275_i0 PRJNA560932 3555 896 13.113001 117.49248896 Amoeba proteus 5775 Tubulinea other_Eukaryota 152 2.9199999999999993e-40   NR AKN09692.1 5775 g3275 i0 32.7 0.950892857142857 284 183 93.4 6 18 854 3 283 AKN09692.1 Tom40 [Amoeba proteus] diamond 852 152 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
31659136 31659136 PRJNA560932_P_NODE_67457_length_241_cov_0.886905_g67101_i0 PRJNA560932 67457 241 0.886905 2.13744105 Amoeba proteus 5775 Tubulinea other_Eukaryota 90.1 5.25e-19   NR AAD37351.1 5775 g67101 i0 56.9 1.81742738589212 72 31 89.6 0 240 25 123 194 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 438 90.1 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;