RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA560029" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

analysis 2

tax_superkingdom 1

  • Viruses · 12 ✖

bioproject 1

  • PRJNA560029 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1819536 1819536 PRJNA560029_S_NODE_2082_length_585_cov_12.806641_g1864_i0 PRJNA560029 2082 585 12.806641 74.91884985 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.016   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g1864 i0 100 0.0495726495726496 29 0 5 0 557 585 41 13 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 29 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
6922166 6922166 PRJNA560029_S_NODE_36286_length_234_cov_18.422360_g36062_i0 PRJNA560029 36286 234 18.42236 43.1083224 Carlavirus latensdianthi 3427766 Viruses Viruses 60.2 1.25e-4   NTclustered gi|1995060321|gb|MN450069.1| 12164 g36062 i0 100 0.615384615384615 32 0 14 0 1 32 13 44 Carnation latent virus isolate KL, complete genome blastn 144 60.2 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
6922168 6922168 PRJNA560029_S_NODE_3646_length_478_cov_5.108642_g3423_i0 PRJNA560029 3646 478 5.108642 24.41930876 Zebrafish picornavirus 1 2304617 Viruses Viruses 817 0   NTclustered gi|1812398529|gb|MN524064.1| 2304617 g3423 i0 97.495 4.01464435146443 479 11 100 1 1 478 7762 8240 Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome blastn 1919 817 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1
12023053 12023053 PRJNA560029_S_NODE_25930_length_275_cov_2.826733_g25706_i0 PRJNA560029 25930 275 2.826733 7.77351575 uncultured phage 278008 Viruses Viruses 459 1.27e-124   NTclustered gi|2575859744|emb|OY731452.1| 278008 g25706 i0 96.727 14.0909090909091 275 9 100 0 1 275 8760 9034 uncultured phage genome assembly, chromosome: 1 blastn 3875 459 1 Viruses               uncultured phage
17708392 17708392 PRJNA560029_S_NODE_3294_length_495_cov_2.426540_g3072_i0 PRJNA560029 3294 495 2.42654 12.011373 Botourmiaviridae 2560063 Viruses Viruses 82.4 6.16e-11   NTclustered gi|2500381378|ref|NC_076801.1| 2686545 g3072 i0 100 2.55757575757576 44 0 9 0 409 452 2288 2331 Plasmopara viticola lesion associated ourmia-like virus 72 isolate DMG-F_43929 RNA dependent RNA polymerase (QKR77_gp1) gene, complete cds blastn 1266 82.4 1 Viruses   Orthornavirae Lenarviricota Miaviricetes Ourlivirales Botourmiaviridae Scleroulivirus Scleroulivirus lambdaplasmoparae
19670750 19670750 PRJNA560029_S_NODE_7396_length_395_cov_4.381988_g7172_i0 PRJNA560029 7396 395 4.381988 17.3088526 Polycipiviridae sp. 2496155 Viruses Viruses 52.8 0.038   NTclustered gi|2756421824|gb|PP744841.1| 2496155 g7172 i0 90.244 0.10379746835443 41 3 10 1 343 382 9211 9171 MAG: Polycipiviridae sp. isolate 086_167342 genomic sequence blastn 41 52.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Polycipiviridae   Polycipiviridae sp.
22221168 22221168 PRJNA560029_S_NODE_3058_length_507_cov_90.850230_g2836_i0 PRJNA560029 3058 507 90.85023 460.6106661 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.014   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g2836 i0 100 0.112426035502959 29 0 6 0 479 507 41 13 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
23496307 23496307 PRJNA560029_S_NODE_22739_length_290_cov_1.064516_g22515_i0 PRJNA560029 22739 290 1.064516 3.0870964 Bacteriophage sp. 38018 Viruses Viruses 531 2.83e-146   NTclustered gi|2295199330|gb|OP074424.1| 38018 g22515 i0 99.655 28.9344827586207 290 1 100 0 1 290 30888 31177 MAG: Bacteriophage sp. isolate 2226_130423, complete genome blastn 8391 531 1 Viruses               Bacteriophage sp.
23496654 23496654 PRJNA560029_S_NODE_7479_length_394_cov_3.897196_g7255_i0 PRJNA560029 7479 394 3.897196 15.35495224 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 536 8.539999999999998e-148   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g7255 i0 91.304 0.99238578680203 391 33 99 1 1 390 6719 7109 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 391 536 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
28278904 28278904 PRJNA560029_S_NODE_26006_length_275_cov_1.648515_g25782_i0 PRJNA560029 26006 275 1.648515 4.53341625 Sopatryd virus 3131622 Viruses Viruses 44.7 0.011   NR WZH61674.1 3131622 g25782 i0 34.1 0.894545454545455 82 39 73.1 2 211 11 1 82 WZH61674.1 MAG: maturation protein [Sopatryd virus] diamond 246 44.7 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Sopatryd virus
30615991 30615991 PRJNA560029_S_NODE_22593_length_290_cov_3.852535_g22369_i0 PRJNA560029 22593 290 3.852535 11.1723515 Caudoviricetes sp. 2832643 Viruses Viruses 61.6 1.1e-8   NR XOR77704.1 2832643 g22369 i0 43.5 0.713793103448276 69 38 71.4 1 287 81 7 74 XOR77704.1 MAG: hypothetical protein [Caudoviricetes sp.] diamond 207 61.6 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
32292359 32292359 PRJNA560029_S_NODE_5619_length_422_cov_9.819484_g5395_i0 PRJNA560029 5619 422 9.819484 41.43822248 ssRNA phage SRR696 3429138 Viruses Viruses 129 9.48e-33   NR YP_010769112.1 2786515 g5395 i0 51.1 2.00473933649289 141 63 97.4 2 1 411 257 395 YP_010769112.1 maturation protein [ssRNA phage SRR6960507_5] diamond 846 129 1 Viruses   Orthornavirae Lenarviricota Leviviricetes Norzivirales Fiersviridae Haeldovirus Haeldovirus asiohabitans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;