RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA560029" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 4 ✖

bioproject 1

  • PRJNA560029 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
544168 544168 PRJNA560029_S_NODE_38061_length_196_cov_11.349593_g37837_i0 PRJNA560029 38061 196 11.349593 22.24520228 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.017   NTclustered gi|323706731|gb|CP002529.1| 985053 g37837 i0 100 0.142857142857143 28 0 14 0 148 175 336100 336127 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
26730392 26730392 PRJNA560029_S_NODE_5021_length_435_cov_3.541436_g4797_i0 PRJNA560029 5021 435 3.541436 15.4052466 archaeon 1906665 Archaea Archaea 55.8 2.78e-6   NR MDP2435560.1 1906665 g4797 i0 50 0.703448275862069 52 24 35.9 1 253 408 117 166 MDP2435560.1 hypothetical protein [archaeon] diamond 306 55.8 1 Archaea               archaeon
29668033 29668033 PRJNA560029_S_NODE_27290_length_269_cov_6.602041_g27066_i0 PRJNA560029 27290 269 6.602041 17.75949029 Promethearchaeota archaeon 2053489 Archaea Archaea 45.8 0.00106   NR MBN2151511.1 2053489 g27066 i0 39 0.657992565055762 59 36 65.8 0 268 92 58 116 MBN2151511.1 hypothetical protein [Promethearchaeota archaeon] diamond 177 45.8 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
30995283 30995283 PRJNA560029_S_NODE_18034_length_313_cov_1.358333_g17810_i0 PRJNA560029 18034 313 1.358333 4.25158229 Nanobdellota archaeon 2026764 Archaea Archaea 88.6 6.87e-18   NR MEK6858974.1 2026764 g17810 i0 44.3 1.01597444089457 106 56 98.7 1 312 4 235 340 MEK6858974.1 hypothetical protein [Nanoarchaeota archaeon] diamond 318 88.6 1 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;