RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA560029", tax_phylum = "Elusimicrobiota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Elusimicrobiota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA560029 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27836946 27836946 PRJNA560029_S_NODE_31664_length_252_cov_2.424581_g31440_i0 PRJNA560029 31664 252 2.424581 6.10994412 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 44.3 0.0117   NR MDP3541067.1 2030800 g31440 i0 38.9 1.97619047619048 54 33 64.3 0 49 210 315 368 MDP3541067.1 hypothetical protein [Elusimicrobiota bacterium] diamond 498 44.3 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium
30598353 30598353 PRJNA560029_S_NODE_20053_length_302_cov_4.096070_g19829_i0 PRJNA560029 20053 302 4.09607 12.3701314 Bacteria 2 Bacteria Bacteria 117 5.33e-28   NR MBQ7908591.1 2735568 g19829 i0 74.4 7.45033112582781 82 21 81.5 0 246 1 168 249 MBQ7908591.1 PTS sugar transporter subunit IIA [Elusimicrobiaceae bacterium] diamond 2250 117 1 Bacteria   Pseudomonadati Elusimicrobiota Elusimicrobia Elusimicrobiales Elusimicrobiaceae   Elusimicrobiaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;