RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA560029" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA560029 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27819701 27819701 PRJNA560029_S_NODE_12044_length_350_cov_4.722022_g11820_i0 PRJNA560029 12044 350 4.722022 16.527077 Echinodermata 7586 Echinodermata other_Eukaryota 63.5 6.67e-10   NR XP_041454105.1 7654 g11820 i0 50.8 1.74 65 32 55.7 0 345 151 73 137 XP_041454105.1 60S ribosomal protein L14-like isoform X1 [Lytechinus variegatus] diamond 609 63.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
30805702 30805702 PRJNA560029_S_NODE_36994_length_228_cov_2.283871_g36770_i0 PRJNA560029 36994 228 2.283871 5.20722588 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 45.8 4.91e-4   NR KAJ8043773.1 206669 g36770 i0 52.3 1.75 44 21 57.9 0 5 136 56 99 KAJ8043773.1 hypothetical protein HOLleu_11030 [Holothuria leucospilota] diamond 399 45.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;