RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA560029" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA560029 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28026656 28026656 PRJNA560029_S_NODE_28285_length_265_cov_3.906250_g28061_i0 PRJNA560029 28285 265 3.90625 10.3515625 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 61.2 1.43e-8   NR XP_004367846.1 1257118 g28061 i0 38.3 0.916981132075472 81 50 91.7 0 245 3 1 81 XP_004367846.1 Leucinerich repeat protein lrrA, putative [Acanthamoeba castellanii str. Neff] diamond 243 61.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29889568 29889568 PRJNA560029_S_NODE_8431_length_382_cov_5.313916_g8207_i0 PRJNA560029 8431 382 5.313916 20.29915912 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 57 1.39e-6   NR XP_004344132.1 1257118 g8207 i0 34 0.832460732984293 106 61 83.2 2 375 58 197 293 XP_004344132.1 Olinked GlcNAc transferase-like protein [Acanthamoeba castellanii str. Neff] diamond 318 57 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30346245 30346245 PRJNA560029_S_NODE_18112_length_312_cov_3.966527_g17888_i0 PRJNA560029 18112 312 3.966527 12.37556424 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 57.8 4.4e-7   NR XP_004341420.1 1257118 g17888 i0 40 1.42307692307692 70 34 59.6 1 3 188 742 811 XP_004341420.1 vacuolar sorting protein, putative [Acanthamoeba castellanii str. Neff] diamond 444 57.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30458529 30458529 PRJNA560029_S_NODE_8053_length_387_cov_2.767516_g7829_i0 PRJNA560029 8053 387 2.767516 10.71028692 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 115 3.15e-28   NR XP_004339668.1 1257118 g7829 i0 64.4 2.66666666666667 90 23 62.8 1 377 135 211 300 XP_004339668.1 Ras subfamily protein, putative [Acanthamoeba castellanii str. Neff] diamond 1032 115 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;