RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA560029", tax_phylum = "Chytridiomycota" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 6 ✖

tax_phylum 1

  • Chytridiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA560029 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28563372 28563372 PRJNA560029_S_NODE_13687_length_339_cov_3.172932_g13463_i0 PRJNA560029 13687 339 3.172932 10.75623948 Gaertneriomyces semiglobifer 109897 Fungi Fungi 60.8 4.82e-8   NR KAI8998131.1 109897 g13463 i0 64.9 0.982300884955752 37 13 32.7 0 337 227 489 525 KAI8998131.1 WD40-repeat-containing domain protein [Gaertneriomyces semiglobifer] diamond 333 60.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
29068636 29068636 PRJNA560029_S_NODE_18148_length_312_cov_2.832636_g17924_i0 PRJNA560029 18148 312 2.832636 8.83782432 Blyttiomyces sp. JEL 2750429 Fungi Fungi 79.3 2.4e-15   NR KAJ3327750.1 2724214 g17924 i0 50 6 78 36 75 1 2 235 169 243 KAJ3327750.1 hypothetical protein HDU76_011191 [Blyttiomyces sp. JEL0837] diamond 1872 79.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes     Blyttiomyces Blyttiomyces sp. JEL0837
29100142 29100142 PRJNA560029_S_NODE_9368_length_373_cov_1.783333_g9144_i0 PRJNA560029 9368 373 1.783333 6.65183209 Synchytrium endobioticum 286115 Fungi Fungi 77.4 1.17e-13   NR TPX46046.1 286115 g9144 i0 62.7 0.900804289544236 59 21 46.6 1 198 371 551 609 TPX46046.1 aspartate transaminase [Synchytrium endobioticum] diamond 336 77.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium endobioticum
30882809 30882809 PRJNA560029_S_NODE_13374_length_341_cov_3.485075_g13150_i0 PRJNA560029 13374 341 3.485075 11.88410575 Fungi 4751 Fungi Fungi 49.3 5.26e-4   NR KAI8585171.1 109894 g13150 i0 56.8 2.3049853372434 37 16 32.6 0 328 218 321 357 KAI8585171.1 WD40-repeat-containing domain protein [Geranomyces variabilis] diamond 786 49.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis
31785563 31785563 PRJNA560029_S_NODE_6277_length_411_cov_2.032544_g6053_i0 PRJNA560029 6277 411 2.032544 8.35375584 Cladochytrium replicatum 109936 Fungi Fungi 57.8 1.27e-6   NR KAI8812702.1 109936 g6053 i0 60 2.1021897810219 40 16 29.2 0 167 48 117 156 KAI8812702.1 mannosyl-oligosaccharide 1,2-alpha-mannosidase [Cladochytrium replicatum] diamond 864 57.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Cladochytriaceae Cladochytrium Cladochytrium replicatum
32369487 32369487 PRJNA560029_S_NODE_34819_length_243_cov_0.905882_g34595_i0 PRJNA560029 34819 243 0.905882 2.20129326 Terramycetaceae 451451 Fungi Fungi 60.1 2.85e-8   NR KAJ3258646.1 261099 g34595 i0 45.7 3.45679012345679 70 35 86.4 2 26 235 739 805 KAJ3258646.1 hypothetical protein HK103_003435 [Boothiomyces macroporosus] diamond 840 60.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Terramycetaceae Boothiomyces Boothiomyces macroporosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;