RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA560029" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA560029 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16433152 16433152 PRJNA560029_S_NODE_33593_length_246_cov_1.780347_g33369_i0 PRJNA560029 33593 246 1.780347 4.37965362 root 1 Root_unresolved Root_unresolved 420 5.29e-113   NTclustered gi|1887121882|gb|CP059971.1| 197 g33369 i0 100 95.9674796747967 227 0 92 0 1 227 101671 101445 Campylobacter jejuni strain C34 chromosome, complete genome blastn 23608 420 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
18981804 18981804 PRJNA560029_S_NODE_1715_length_630_cov_3.086176_g1502_i0 PRJNA560029 1715 630 3.086176 19.4429088 Bacteria 2 Bacteria Bacteria 1144 0   NTclustered gi|2030395107|gb|CP068586.1| 195 g1502 i0 99.368 101.480952380952 633 1 100 1 1 630 1535490 1536122 Campylobacter coli strain CC19CH076 chromosome, complete genome blastn 63933 1144 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
23496588 23496588 PRJNA560029_S_NODE_37439_length_219_cov_4.219178_g37215_i0 PRJNA560029 37439 219 4.219178 9.23999982 Malaciobacter marinus 505249 Bacteria Bacteria 52.8 0.019   NTclustered gi|1474785413|gb|CP032101.1| 505249 g37215 i0 100 0.127853881278539 28 0 13 0 78 105 1771318 1771291 Malaciobacter marinus strain JCM 15502 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter marinus
30710849 30710849 PRJNA560029_S_NODE_25954_length_275_cov_2.391089_g25730_i0 PRJNA560029 25954 275 2.391089 6.57549475 Helicobacter pylori 210 Bacteria Bacteria 42.4 0.00638   NR GAA9153132.1 210 g25730 i0 77.3 0.48 22 5 24 0 206 271 30 51 GAA9153132.1 hypothetical protein Kyoto190A_4630 [Helicobacter pylori] diamond 132 42.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;