RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA560029", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA560029 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27061328 27061328 PRJNA560029_S_NODE_34362_length_244_cov_1.350877_g34138_i0 PRJNA560029 34362 244 1.350877 3.29613988 Bacteria 2 Bacteria Bacteria 109 1.39e-25   NR WP_201327449.1 981385 g34138 i0 58 7.7827868852459 81 34 99.6 0 244 2 344 424 WP_201327449.1 ATP-dependent helicase [Thermotomaculum hydrothermale] diamond 1899 110 0.990909090909091 Bacteria   Pseudomonadati Acidobacteriota Holophagae Thermotomaculales Thermotomaculaceae Thermotomaculum Thermotomaculum hydrothermale
28058044 28058044 PRJNA560029_S_NODE_36145_length_236_cov_2.938650_g35921_i0 PRJNA560029 36145 236 2.93865 6.935214 Acidobacteriota bacterium 1978231 Bacteria Bacteria 43.5 0.0151   NR TDI32633.1 1978231 g35921 i0 41.5 0.673728813559322 53 31 67.4 0 77 235 27 79 TDI32633.1 MAG: hypothetical protein E2P03_06370 [Acidobacteriota bacterium] diamond 159 43.5 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29510383 29510383 PRJNA560029_S_NODE_17990_length_313_cov_2.245833_g17766_i0 PRJNA560029 17990 313 2.245833 7.02945729 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 144 1.18e-37   NR HUA19856.1 2212468 g17766 i0 72.7 17.6549520766773 88 24 84.3 0 311 48 545 632 HUA19856.1 formate--tetrahydrofolate ligase [Bryobacteraceae bacterium] diamond 5526 144 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;