RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA560029", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA560029 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28072032 28072032 PRJNA560029_S_NODE_15265_length_329_cov_1.957031_g15041_i0 PRJNA560029 15265 329 1.957031 6.43863199 Thermodesulfobacteriota 200940 Bacteria Bacteria 49.3 4.66e-4   NR WP_321394508.1 219183 g15041 i0 44 1.3677811550152 50 27 44.7 1 323 177 326 375 WP_321394508.1 Nif3-like dinuclear metal center hexameric protein [uncultured Desulfuromusa sp.] diamond 450 49.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae Desulfuromusa uncultured Desulfuromusa sp.
32671030 32671030 PRJNA560029_S_NODE_8640_length_380_cov_3.788274_g8416_i0 PRJNA560029 8640 380 3.788274 14.3954412 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 72 7.2e-12   NR MFC1891846.1 2202153 g8416 i0 59.3 1.31842105263158 59 23 46.6 1 377 201 296 353 MFC1891846.1 branched-chain amino acid aminotransferase [Thermodesulfobacteriota bacterium] diamond 501 72 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;