RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA560029", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA560029 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20256980 20256980 PRJNA560029_S_NODE_2616_length_537_cov_5.267241_g2395_i0 PRJNA560029 2616 537 5.267241 28.28508417 Polyangiaceae bacterium 2268199 Bacteria Bacteria 76.3 1.77e-12   NR MCU0683071.1 2268199 g2395 i0 30.3 1.05027932960894 188 108 97.2 7 537 16 532 710 MCU0683071.1 F0F1 ATP synthase subunit alpha [Polyangiaceae bacterium] diamond 564 76.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32576865 32576865 PRJNA560029_S_NODE_7819_length_390_cov_1.823344_g7595_i0 PRJNA560029 7819 390 1.823344 7.1110416 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 65.9 4.14e-10   NR MBW1848174.1 2026735 g7595 i0 39.1 1.4 92 43 63.8 4 3 251 126 213 MBW1848174.1 nitroreductase [Deltaproteobacteria bacterium] diamond 546 65.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;