RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA560029", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA560029 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29289412 29289412 PRJNA560029_S_NODE_14369_length_335_cov_1.469466_g14145_i0 PRJNA560029 14369 335 1.469466 4.9227111 Chloroflexota bacterium 2026724 Bacteria Bacteria 50.4 2.14e-4   NR MCZ7673867.1 2026724 g14145 i0 35.9 0.698507462686567 78 48 69.9 1 327 94 243 318 MCZ7673867.1 HIRAN domain-containing protein [Chloroflexota bacterium] diamond 234 50.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29289420 29289420 PRJNA560029_S_NODE_32949_length_248_cov_1.491429_g32725_i0 PRJNA560029 32949 248 1.491429 3.69874392 Chloroflexota bacterium 2026724 Bacteria Bacteria 42.7 0.0336   NR MDQ6659873.1 2026724 g32725 i0 33.3 0.834677419354839 69 37 78.6 2 2 196 50 113 MDQ6659873.1 phosphatase PAP2 family protein [Chloroflexota bacterium] diamond 207 42.7 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29478658 29478658 PRJNA560029_S_NODE_3130_length_503_cov_13.000000_g2908_i0 PRJNA560029 3130 503 13 65.39 Anaerolineae bacterium 2052143 Bacteria Bacteria 69.7 5.65e-12   NR MCL4298969.1 2052143 g2908 i0 41.1 0.566600397614314 95 47 51.3 1 412 155 14 108 MCL4298969.1 hypothetical protein [Anaerolineae bacterium] diamond 285 69.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
29762931 29762931 PRJNA560029_S_NODE_15211_length_329_cov_3.308594_g14987_i0 PRJNA560029 15211 329 3.308594 10.88527426 Chloroflexota bacterium 2026724 Bacteria Bacteria 92.4 3.4e-21   NR MBI5296328.1 2026724 g14987 i0 45.3 0.966565349544073 106 58 96.7 0 325 8 25 130 MBI5296328.1 MarR family transcriptional regulator [Chloroflexota bacterium] diamond 318 92.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;