RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA560029", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA560029 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27693501 27693501 PRJNA560029_S_NODE_33484_length_246_cov_3.971098_g33260_i0 PRJNA560029 33484 246 3.971098 9.76890108 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 80.1 2.7e-15   NR SPQ93309.1 37360 g33260 i0 64.9 1.39024390243902 57 20 69.5 0 240 70 470 526 SPQ93309.1 unnamed protein product [Plasmodiophora brassicae] diamond 342 80.1 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30977785 30977785 PRJNA560029_S_NODE_8294_length_384_cov_4.610932_g8070_i0 PRJNA560029 8294 384 4.610932 17.70597888 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 82 3.41e-15   NR CEO95116.1 37360 g8070 i0 66.7 0.8984375 57 19 44.5 0 81 251 2362 2418 CEO95116.1 hypothetical protein PBRA_003882 [Plasmodiophora brassicae] diamond 345 82 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;