RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA560029", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA560029 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4371558 4371558 PRJNA560029_S_NODE_3344_length_493_cov_2.295238_g3122_i0 PRJNA560029 3344 493 2.295238 11.31552334 uncultured marine diatom 285226 SAR_Eukaryotes SAR_Eukaryotes 58.4 0.001   NTclustered gi|223047888|gb|FJ032658.1| 285226 g3122 i0 100 1.33874239350913 31 0 6 0 35 65 1591 1621 Uncultured marine diatom clone DH22_2A36 28S ribosomal RNA gene, partial sequence blastn 660 58.4 1 Eukaryota Sar   Bacillariophyta         uncultured marine diatom
30458520 30458520 PRJNA560029_S_NODE_17053_length_318_cov_1.885714_g16829_i0 PRJNA560029 17053 318 1.885714 5.99657052 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 75.5 3.06e-13   NR KAI2496705.1 210448 g16829 i0 54.4 0.641509433962264 68 29 64.2 1 4 207 1594 1659 KAI2496705.1 DNA dependent RNA polymerase [Fragilaria crotonensis] diamond 204 75.5 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;