RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA560029", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA560029 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30521297 30521297 PRJNA560029_S_NODE_5593_length_423_cov_3.331429_g5369_i0 PRJNA560029 5593 423 3.331429 14.09194467 Opitutales bacterium 2026772 Bacteria Bacteria 167 3.0199999999999996e-45   NR MFI3290980.1 2026772 g5369 i0 66.4 8.50354609929078 122 40 86.5 1 1 366 165 285 MFI3290980.1 anaerobic ribonucleoside triphosphate reductase [Opitutales bacterium] diamond 3597 167 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
32292354 32292354 PRJNA560029_S_NODE_13739_length_339_cov_2.015038_g13515_i0 PRJNA560029 13739 339 2.015038 6.83097882 Akkermansia muciniphila 239935 Bacteria Bacteria 99.8 3.1399999999999995e-23   NR WP_149878251.1 239935 g13515 i0 49.4 1.50442477876106 85 43 75.2 0 323 69 141 225 WP_149878251.1 histidinol-phosphatase, partial [Akkermansia muciniphila] diamond 510 99.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;