RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA560029", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA560029 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30047187 30047187 PRJNA560029_S_NODE_10091_length_366_cov_3.447099_g9867_i0 PRJNA560029 10091 366 3.447099 12.61638234 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 82 2.08e-15   NR MBD3263798.1 2035772 g9867 i0 56.5 3.41803278688525 69 30 56.6 0 2 208 360 428 MBD3263798.1 hydroxylamine reductase [Candidatus Omnitrophota bacterium] diamond 1251 82 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32386860 32386860 PRJNA560029_S_NODE_10419_length_363_cov_6.310345_g10195_i0 PRJNA560029 10419 363 6.310345 22.90655235 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 72.4 1.4e-13   NR MBU1037625.1 2035772 g10195 i0 42.9 3.18181818181818 77 42 62 1 2 226 32 108 MBU1037625.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 1155 72.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;