RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA560029" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA560029 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27836938 27836938 PRJNA560029_S_NODE_12624_length_346_cov_3.014652_g12400_i0 PRJNA560029 12624 346 3.014652 10.43069592 Lentisphaerota bacterium 1932692 Bacteria Bacteria 85.5 3.67e-18   NR MBN1557139.1 1932692 g12400 i0 55.1 2.0635838150289 78 34 67.6 1 104 337 3 79 MBN1557139.1 nitroreductase family protein [Lentisphaerota bacterium] diamond 714 85.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
29352743 29352743 PRJNA560029_S_NODE_1549_length_655_cov_3.152921_g1338_i0 PRJNA560029 1549 655 3.152921 20.65163255 Mariniblastus sp. 2005381 Bacteria Bacteria 113 1.02e-27   NR MFK7768787.1 2005381 g1338 i0 58.9 0.412213740458015 90 37 41.2 0 608 339 79 168 MFK7768787.1 thiol peroxidase [Mariniblastus sp.] diamond 270 113 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Mariniblastus Mariniblastus sp.
30047187 30047187 PRJNA560029_S_NODE_10091_length_366_cov_3.447099_g9867_i0 PRJNA560029 10091 366 3.447099 12.61638234 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 82 2.08e-15   NR MBD3263798.1 2035772 g9867 i0 56.5 3.41803278688525 69 30 56.6 0 2 208 360 428 MBD3263798.1 hydroxylamine reductase [Candidatus Omnitrophota bacterium] diamond 1251 82 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30521297 30521297 PRJNA560029_S_NODE_5593_length_423_cov_3.331429_g5369_i0 PRJNA560029 5593 423 3.331429 14.09194467 Opitutales bacterium 2026772 Bacteria Bacteria 167 3.0199999999999996e-45   NR MFI3290980.1 2026772 g5369 i0 66.4 8.50354609929078 122 40 86.5 1 1 366 165 285 MFI3290980.1 anaerobic ribonucleoside triphosphate reductase [Opitutales bacterium] diamond 3597 167 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
32292354 32292354 PRJNA560029_S_NODE_13739_length_339_cov_2.015038_g13515_i0 PRJNA560029 13739 339 2.015038 6.83097882 Akkermansia muciniphila 239935 Bacteria Bacteria 99.8 3.1399999999999995e-23   NR WP_149878251.1 239935 g13515 i0 49.4 1.50442477876106 85 43 75.2 0 323 69 141 225 WP_149878251.1 histidinol-phosphatase, partial [Akkermansia muciniphila] diamond 510 99.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
32386860 32386860 PRJNA560029_S_NODE_10419_length_363_cov_6.310345_g10195_i0 PRJNA560029 10419 363 6.310345 22.90655235 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 72.4 1.4e-13   NR MBU1037625.1 2035772 g10195 i0 42.9 3.18181818181818 77 42 62 1 2 226 32 108 MBU1037625.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 1155 72.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;