RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA560029", tax_clade = "FCB group" and tax_phylum = "Candidatus Fermentibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Fermentibacterota · 1 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 1 ✖

bioproject 1

  • PRJNA560029 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29271692 29271692 PRJNA560029_S_NODE_8309_length_384_cov_2.906752_g8085_i0 PRJNA560029 8309 384 2.906752 11.16192768 Pseudomonadati 3379134 Bacteria Bacteria 65.9 1.5e-9   NR MCD4706771.1 2822438 g8085 i0 74.2 0.96875 31 8 24.2 0 384 292 676 706 MCD4706771.1 type I DNA topoisomerase [Candidatus Sabulitectum sp.] diamond 372 65.9 1 Bacteria FCB group Pseudomonadati Candidatus Fermentibacterota       Candidatus Sabulitectum Candidatus Sabulitectum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;