RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA560029" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA560029 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28658133 28658133 PRJNA560029_S_NODE_28267_length_265_cov_5.411458_g28043_i0 PRJNA560029 28267 265 5.411458 14.3403637 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 56.2 1.54e-7   NR MFB3060589.1 2838779 g28043 i0 42.6 2.09433962264151 61 35 69.1 0 265 83 71 131 MFB3060589.1 ERAP1-like C-terminal domain-containing protein [Candidatus Binatia bacterium] diamond 555 56.2 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
29447141 29447141 PRJNA560029_S_NODE_1710_length_630_cov_31.791741_g1497_i0 PRJNA560029 1710 630 31.791741 200.2879683 Candidatus Saccharibacteria bacterium 2026720 Bacteria Bacteria 62 7.71e-9   NR PID29309.1 2026720 g1497 i0 68.8 0.438095238095238 48 15 22.9 0 213 70 2 49 PID29309.1 MAG: gas vesicle protein [Candidatus Saccharibacteria bacterium] diamond 276 62 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
29636424 29636424 PRJNA560029_S_NODE_21150_length_297_cov_2.334821_g20926_i0 PRJNA560029 21150 297 2.334821 6.93441837 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 97.1 7.47e-22   NR HKU18571.1 2973664 g20926 i0 59.6 2.82828282828283 94 38 94.9 0 3 284 120 213 HKU18571.1 M15 family metallopeptidase [Candidatus Saccharimonadales bacterium] diamond 840 97.1 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
29668025 29668025 PRJNA560029_S_NODE_14070_length_337_cov_1.420455_g13846_i0 PRJNA560029 14070 337 1.420455 4.78693335 Patescibacteria group bacterium 2052139 Bacteria Bacteria 55.8 2.42e-6   NR MCP6727484.1 2052139 g13846 i0 45.6 0.507418397626113 57 29 50.7 2 50 220 269 323 MCP6727484.1 hypothetical protein [Patescibacteria group bacterium] diamond 171 55.8 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;