RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA559720" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA559720 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29384301 29384301 PRJNA559720_P_NODE_8589_length_340_cov_1.101124_g8450_i0 PRJNA559720 8589 340 1.101124 3.7438216 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 43.9 0.0403   NR MFL6529243.1 2201154 g8450 i0 36.6 0.361764705882353 41 26 36.2 0 87 209 196 236 MFL6529243.1 chromate efflux transporter [Chthoniobacterales bacterium] diamond 123 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
31627508 31627508 PRJNA559720_P_NODE_13416_length_252_cov_1.206704_g13277_i0 PRJNA559720 13416 252 1.206704 3.04089408 Puniceicoccales bacterium 2478473 Bacteria Bacteria 45.1 0.006   NR MDR0418280.1 2478473 g13277 i0 46 0.595238095238095 50 26 58.3 1 36 182 287 336 MDR0418280.1 tRNA 2-thiouridine(34) synthase MnmA [Puniceicoccales bacterium] diamond 150 45.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales     Puniceicoccales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;