RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA559720", tax_phylum = "Spirochaetota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA559720 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26920780 26920780 PRJNA559720_P_NODE_14122_length_249_cov_0.875000_g13983_i0 PRJNA559720 14122 249 0.875 2.17875 Candidatus Treponema caballi 3083137 Bacteria Bacteria 99.8 2.46e-25   NR MBQ0166266.1 3083137 g13983 i0 85.5 0.662650602409639 55 8 66.3 0 249 85 26 80 MBQ0166266.1 hypothetical protein [Candidatus Treponema caballi] diamond 165 99.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Candidatus Treponema caballi
30205062 30205062 PRJNA559720_P_NODE_6712_length_394_cov_1.965732_g6573_i0 PRJNA559720 6712 394 1.965732 7.74498408 Oceanispirochaeta crateris 2518645 Bacteria Bacteria 62 2.61e-8   NR WP_149485568.1 2518645 g6573 i0 32.7 0.791878172588833 104 69 78.4 1 340 32 189 292 WP_149485568.1 ankyrin repeat domain-containing protein [Oceanispirochaeta crateris] diamond 312 62 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Oceanispirochaeta Oceanispirochaeta crateris
32133890 32133890 PRJNA559720_P_NODE_2278_length_676_cov_1.902156_g2160_i0 PRJNA559720 2278 676 1.902156 12.85857456 Treponema sp. 166 Bacteria Bacteria 48.9 0.00791   NR WP_296849922.1 166 g2160 i0 24.7 0.789940828402367 178 111 74.1 5 73 573 48 213 WP_296849922.1 DUF4105 domain-containing protein [Treponema sp.] diamond 534 48.9 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
32828661 32828661 PRJNA559720_P_NODE_11940_length_275_cov_1.143564_g11801_i0 PRJNA559720 11940 275 1.143564 3.144801 Leptospiraceae bacterium 2026757 Bacteria Bacteria 46.6 0.0017   NR MBP9884724.1 2026757 g11801 i0 47.9 0.523636363636364 48 24 52.4 1 72 215 16 62 MBP9884724.1 CoA pyrophosphatase [Leptospiraceae bacterium] diamond 144 46.6 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;