RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA559720", tax_phylum = "Methanobacteriota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA559720 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12022642 12022642 PRJNA559720_P_NODE_1930_length_725_cov_1.756135_g1818_i0 PRJNA559720 1930 725 1.756135 12.73197875 Methanobacteriati 3366610 Archaea Archaea 224 7.159999999999999e-68   NR MBT7938301.1 2026739 g1818 i0 51.4 22.8579310344828 222 104 90.6 3 8 664 121 341 MBT7938301.1 CTP synthase (glutamine hydrolyzing) [Methanobacteriota archaeon] diamond 16572 224 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
28640613 28640613 PRJNA559720_P_NODE_2167_length_692_cov_1.386107_g2054_i0 PRJNA559720 2167 692 1.386107 9.59186044 root 1 Root_unresolved Root_unresolved 52 8.34e-4   NR MCZ7357408.1 2032688 g2054 i0 27.4 1.3135838150289 212 131 90.2 9 632 9 8 200 MCZ7357408.1 TraB/GumN family protein [Candidatus Methanoperedens sp.] diamond 909 52.4 0.99236641221374 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedens Candidatus Methanoperedens sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;