RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA559720", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA559720 · 8 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5647339 5647339 PRJNA559720_P_NODE_13785_length_250_cov_0.870056_g13646_i0 PRJNA559720 13785 250 0.870056 2.17514 Polyangiaceae bacterium 2268199 Bacteria Bacteria 140 9.31e-38   NR MFO0670556.1 2268199 g13646 i0 80.7 6.948 83 16 99.6 0 250 2 110 192 MFO0670556.1 sigma 54-interacting transcriptional regulator [Polyangiaceae bacterium] diamond 1737 140 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
15846364 15846364 PRJNA559720_P_NODE_2673_length_626_cov_2.220615_g2553_i0 PRJNA559720 2673 626 2.220615 13.9010499 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 186 5.589999999999998e-55   NR MBI2609126.1 2026735 g2553 i0 59.7 16.4568690095847 154 60 73.3 2 626 168 120 272 MBI2609126.1 NAD(P)-dependent oxidoreductase [Deltaproteobacteria bacterium] diamond 10302 186 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
26889344 26889344 PRJNA559720_P_NODE_12801_length_261_cov_1.234043_g12662_i0 PRJNA559720 12801 261 1.234043 3.22085223 Polyangiaceae bacterium 2268199 Bacteria Bacteria 65.5 4.03e-10   NR MCB9584402.1 2268199 g12662 i0 52.9 0.804597701149425 70 29 75.9 2 48 245 298 367 MCB9584402.1 response regulator [Polyangiaceae bacterium] diamond 210 65.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27598657 27598657 PRJNA559720_P_NODE_10264_length_303_cov_1.004348_g10125_i0 PRJNA559720 10264 303 1.004348 3.04317444 Pseudomonadati 3379134 Bacteria Bacteria 140 1.16e-36   NR MCP4498739.1 2026735 g10125 i0 62.2 9.84158415841584 98 37 97 0 9 302 430 527 MCP4498739.1 thiamine pyrophosphate-binding protein [Deltaproteobacteria bacterium] diamond 2982 140 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27616174 27616174 PRJNA559720_P_NODE_11684_length_279_cov_1.218447_g11545_i0 PRJNA559720 11684 279 1.218447 3.39946713 Myxococcales bacterium 2026763 Bacteria Bacteria 43.1 0.0395   NR MCA9527729.1 2026763 g11545 i0 46.9 0.526881720430108 49 23 49.5 1 275 138 24 72 MCA9527729.1 TraB/GumN family protein [Myxococcales bacterium] diamond 147 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28103512 28103512 PRJNA559720_P_NODE_6585_length_398_cov_3.341538_g6446_i0 PRJNA559720 6585 398 3.341538 13.29932124 Bacteria 2 Bacteria Bacteria 81.3 4.11e-15   NR MCA9519868.1 2026763 g6446 i0 35.2 1.8391959798995 122 76 92 2 33 398 227 345 MCA9519868.1 metallophosphoesterase [Myxococcales bacterium] diamond 732 81.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29713572 29713572 PRJNA559720_P_NODE_15570_length_244_cov_0.900585_g15431_i0 PRJNA559720 15570 244 0.900585 2.1974274 Myxococcia 32015 Bacteria Bacteria 146 1.6199999999999996e-40   NR HEY8072454.1 1971228 g15431 i0 88.9 10.9549180327869 81 9 99.6 0 2 244 64 144 HEY8072454.1 LON peptidase substrate-binding domain-containing protein [Labilithrix sp.] diamond 2673 147 0.993197278911565 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
32355484 32355484 PRJNA559720_P_NODE_16039_length_242_cov_0.911243_g15900_i0 PRJNA559720 16039 242 0.911243 2.20520806 Polyangiaceae bacterium 2268199 Bacteria Bacteria 72.4 1.29e-12   NR HRG98537.1 2268199 g15900 i0 46.3 0.991735537190083 80 43 99.2 0 242 3 474 553 HRG98537.1 hypothetical protein [Polyangiaceae bacterium] diamond 240 72.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;