RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA559720", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA559720 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28247371 28247371 PRJNA559720_P_NODE_5466_length_442_cov_1.520325_g5327_i0 PRJNA559720 5466 442 1.520325 6.7198365 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 52.4 1.34e-4   NR XP_067778172.1 135588 g5327 i0 36 1.18099547511312 89 51 59 2 21 281 940 1024 XP_067778172.1 Clan CA, family C19, ubiquitin hydrolase-like cysteine peptidase [Histomonas meleagridis] diamond 522 52.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30141737 30141737 PRJNA559720_P_NODE_5232_length_453_cov_1.673684_g5093_i0 PRJNA559720 5232 453 1.673684 7.58178852 Tritrichomonas musculus 1915356 Parabasalia other_Eukaryota 46.2 0.0197   NR KAK8833949.1 1915356 g5093 i0 30.4 0.741721854304636 112 59 66.2 3 300 1 113 217 KAK8833949.1 hypothetical protein M9Y10_037656, partial [Tritrichomonas musculus] diamond 336 46.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;