RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where bioproject = "PRJNA559720" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 15 ✖

bioproject 1

  • PRJNA559720 · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1819197 1819197 PRJNA559720_P_NODE_14702_length_247_cov_0.885057_g14563_i0 PRJNA559720 14702 247 0.885057 2.18609079 Echinostelium bisporum 1973072 Evosea other_Eukaryota 383 6.97e-102   NTclustered gi|1465309735|gb|MH809395.1| 1973072 g14563 i0 95.455 52.2307692307692 242 7 98 3 1 242 1305 1542 Echinostelium bisporum isolate Nx14-A1 small subunit ribosomal RNA gene, partial sequence blastn 12901 383 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Echinosteliales Echinosteliidae Echinostelium Echinostelium bisporum
10747836 10747836 PRJNA559720_P_NODE_13089_length_257_cov_1.010870_g12950_i0 PRJNA559720 13089 257 1.01087 2.5979359 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 104 6.729999999999999e-24   NR XP_003289202.1 5786 g12950 i0 55.6 18.0466926070039 81 36 94.6 0 248 6 76 156 XP_003289202.1 UDP-glucose pyrophosphorylase 2 [Dictyostelium purpureum] diamond 4638 105 0.990476190476191 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
22220627 22220627 PRJNA559720_P_NODE_198_length_1553_cov_3.945270_g175_i0 PRJNA559720 198 1553 3.94527 61.2700431 Polysphondylium violaceum 133409 Evosea other_Eukaryota 302 9.56e-91   NR KAF2076314.1 133409 g175 i0 48.8 4.02382485511912 336 165 64.1 3 135 1130 126 458 KAF2076314.1 hypothetical protein CYY_002370 [Polysphondylium violaceum] diamond 6249 302 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
22807498 22807498 PRJNA559720_P_NODE_10218_length_304_cov_0.909091_g10079_i0 PRJNA559720 10218 304 0.909091 2.76363664 Entamoeba 5758 Evosea other_Eukaryota 147 1.26e-30   NTclustered gi|54401028|gb|AY641405.1| 5759 g10079 i0 77.778 2.34210526315789 252 46 81 8 58 304 869 623 Entamoeba histolytica vacuolar ATPase subunit B gene, complete cds blastn 712 147 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
27141786 27141786 PRJNA559720_P_NODE_12522_length_266_cov_0.839378_g12383_i0 PRJNA559720 12522 266 0.839378 2.23274548 Dictyostelium discoideum 44689 Evosea other_Eukaryota 64.7 3.63e-11   NR AAG45131.1 44689 g12383 i0 41.1 1.37593984962406 73 37 75.6 1 207 7 22 94 AAG45131.1 unknown, partial [Dictyostelium discoideum] diamond 366 64.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
27268559 27268559 PRJNA559720_P_NODE_6003_length_419_cov_3.332370_g5864_i0 PRJNA559720 6003 419 3.33237 13.9626303 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 45.8 0.00299   NR KYQ92517.1 361077 g5864 i0 34 0.379474940334129 53 35 37.9 0 142 300 40 92 KYQ92517.1 cytochrome c oxidase subunit VIb [Tieghemostelium lacteum] diamond 159 45.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
27489825 27489825 PRJNA559720_P_NODE_2003_length_714_cov_1.992200_g1891_i0 PRJNA559720 2003 714 1.9922 14.224308 Entamoeba dispar SAW76 46681 Evosea other_Eukaryota 51.6 4.72e-4   NR XP_001734015.1 370354 g1891 i0 27.2 0.710084033613445 169 97 63.9 5 707 252 30 189 XP_001734015.1 uncharacterized protein EDI_298050 [Entamoeba dispar SAW760] diamond 507 51.6 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
27647776 27647776 PRJNA559720_P_NODE_12584_length_265_cov_1.020833_g12445_i0 PRJNA559720 12584 265 1.020833 2.70520745 Dictyostelium purpureum 5786 Evosea other_Eukaryota 70.9 6.18e-12   NR XP_003287385.1 5786 g12445 i0 53.4 0.656603773584906 58 27 65.7 0 2 175 485 542 XP_003287385.1 uncharacterized protein DICPUDRAFT_32400 [Dictyostelium purpureum] diamond 174 70.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
27963342 27963342 PRJNA559720_P_NODE_13365_length_252_cov_2.715084_g13226_i0 PRJNA559720 13365 252 2.715084 6.84201168 Cavenderia fasciculata 261658 Evosea other_Eukaryota 62.8 9.55e-10   NR XP_004359634.1 261658 g13226 i0 53.7 0.642857142857143 54 25 64.3 0 206 45 136 189 XP_004359634.1 DJ-1/ThiJ/PfpI family protein [Cavenderia fasciculata] diamond 162 62.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
29415647 29415647 PRJNA559720_P_NODE_16169_length_242_cov_0.911243_g16030_i0 PRJNA559720 16169 242 0.911243 2.20520806 Dictyostelium purpureum 5786 Evosea other_Eukaryota 96.3 9.51e-22   NR XP_003290573.1 5786 g16030 i0 59 1.99586776859504 78 29 96.7 1 234 1 194 268 XP_003290573.1 uncharacterized protein DICPUDRAFT_155103 [Dictyostelium purpureum] diamond 483 96.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
29713575 29713575 PRJNA559720_P_NODE_8630_length_339_cov_0.778195_g8491_i0 PRJNA559720 8630 339 0.778195 2.63808105 root 1 Root_unresolved Root_unresolved 75.5 3.65e-13   NR XP_642437.1 352472 g8491 i0 44.7 9.53982300884956 85 34 75.2 2 8 262 291 362 XP_642437.1 hypothetical protein DDB_G0278551 [Dictyostelium discoideum AX4] diamond 3234 75.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
31546896 31546896 PRJNA559720_P_NODE_12436_length_267_cov_1.159794_g12297_i0 PRJNA559720 12436 267 1.159794 3.09664998 root 1 Root_unresolved Root_unresolved 94.7 2.61e-20   NR PRP82844.1 1890364 g12297 i0 65.2 4.73033707865169 66 23 74.2 0 267 70 417 482 PRP82844.1 hypothetical protein PROFUN_04707 [Planoprotostelium fungivorum] diamond 1263 95.1 0.995793901156677 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31596201 31596201 PRJNA559720_P_NODE_6416_length_404_cov_1.344411_g6277_i0 PRJNA559720 6416 404 1.344411 5.43142044 Dictyostelium purpureum 5786 Evosea other_Eukaryota 104 1.29e-23   NR XP_003293769.1 5786 g6277 i0 39.3 0.905940594059406 122 70 89.9 2 39 401 4 122 XP_003293769.1 uncharacterized protein DICPUDRAFT_51128 [Dictyostelium purpureum] diamond 366 104 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
31912272 31912272 PRJNA559720_P_NODE_2137_length_695_cov_2.073955_g2025_i0 PRJNA559720 2137 695 2.073955 14.41398725 Polysphondylium violaceum 133409 Evosea other_Eukaryota 118 8.69e-29   NR KAF2076370.1 133409 g2025 i0 34.8 0.807194244604317 187 120 79.9 1 629 75 8 194 KAF2076370.1 hypothetical protein CYY_002327 [Polysphondylium violaceum] diamond 561 118 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
32608172 32608172 PRJNA559720_P_NODE_6300_length_408_cov_5.513433_g6161_i0 PRJNA559720 6300 408 5.513433 22.49480664 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 85.5 1.27e-17   NR KYR00502.1 361077 g6161 i0 46.6 0.647058823529412 88 46 64.7 1 140 403 79 165 KYR00502.1 succinate dehydrogenase [Tieghemostelium lacteum] diamond 264 85.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;