contig_metadata
124 rows where bioproject = "PRJNA558770" and tax_phylum = "Kitrinoviricota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 538605 | 538605 | PRJNA558770_P_NODE_173501_length_234_cov_4.974874_g171496_i0 | PRJNA558770 | 173501 | 234 | 4.974874 | 11.64120516 | Pestivirus bovis | 3052619 | Viruses | Viruses | 134 | 7.28e-27 | NTclustered | gi|800924318|gb|KP941584.1| | 11099 | g171496 | i0 | 98.667 | 24.4615384615385 | 75 | 1 | 64 | 0 | 1 | 75 | 6714 | 6640 | Bovine viral diarrhea virus 1 strain USMARC-53875 polyprotein gene, complete cds | blastn | 5724 | 134 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 1130035 | 1130035 | PRJNA558770_P_NODE_47121_length_313_cov_2.744604_g45119_i0 | PRJNA558770 | 47121 | 313 | 2.744604 | 8.59061052 | Pestivirus | 11095 | Viruses | Viruses | 387 | 7.069999999999998e-103 | NTclustered | gi|1129880467|gb|KX170601.1| | 11099 | g45119 | i0 | 97.357 | 76.9361022364217 | 227 | 6 | 96 | 0 | 2 | 228 | 646 | 420 | Bovine viral diarrhea virus 1 isolate V100 NS5A gene, partial cds | blastn | 24081 | 387 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 1814518 | 1814518 | PRJNA558770_P_NODE_183102_length_234_cov_4.497487_g181097_i0 | PRJNA558770 | 183102 | 234 | 4.497487 | 10.52411958 | Pestivirus bovis | 3052619 | Viruses | Viruses | 128 | 3.38e-25 | NTclustered | gi|669206613|gb|KF501393.1| | 11099 | g181097 | i0 | 97.333 | 40.525641025641 | 75 | 2 | 32 | 0 | 1 | 75 | 10114 | 10040 | Bovine viral diarrhea virus 1 strain BVDV JL-1, complete genome | blastn | 9483 | 128 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 1815324 | 1815324 | PRJNA558770_P_NODE_22862_length_426_cov_21.368286_g20947_i0 | PRJNA558770 | 22862 | 426 | 21.368286 | 91.02889836 | Pestivirus bovis | 3052619 | Viruses | Viruses | 300 | 1.33e-76 | NTclustered | gi|1350888790|gb|KY852366.1| | 11099 | g20947 | i0 | 97.701 | 82.2910798122066 | 174 | 4 | 41 | 0 | 1 | 174 | 202 | 29 | Bovine viral diarrhea virus 1 isolate S1118 E2 glycoprotein gene, partial cds | blastn | 35056 | 300 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 3090552 | 3090552 | PRJNA558770_P_NODE_22723_length_427_cov_12.487245_g20808_i0 | PRJNA558770 | 22723 | 427 | 12.487245 | 53.32053615 | Pestivirus bovis | 3052619 | Viruses | Viruses | 479 | 1.5899999999999996e-130 | NTclustered | gi|1129880425|gb|KX170580.1| | 11099 | g20808 | i0 | 99.248 | 65.3887587822014 | 266 | 1 | 62 | 1 | 160 | 424 | 876 | 611 | Bovine viral diarrhea virus 1 isolate V099 NS4B gene, partial cds | blastn | 27921 | 479 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 3091904 | 3091904 | PRJNA558770_P_NODE_31823_length_383_cov_3.456897_g29844_i0 | PRJNA558770 | 31823 | 383 | 3.456897 | 13.23991551 | Pestivirus bovis | 3052619 | Viruses | Viruses | 257 | 7.21e-64 | NTclustered | gi|59624986|gb|AY911672.1| | 312035 | g29844 | i0 | 89.352 | 60.0835509138381 | 216 | 8 | 52 | 6 | 1 | 201 | 2338 | 2123 | Bovine pestivirus Ind S1226 polyprotein gene, partial cds | blastn | 23012 | 257 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 3091973 | 3091973 | PRJNA558770_P_NODE_32463_length_378_cov_18.078717_g30483_i0 | PRJNA558770 | 32463 | 378 | 18.078717 | 68.33755026 | Pestivirus bovis | 3052619 | Viruses | Viruses | 302 | 3.24e-77 | NTclustered | gi|1350888790|gb|KY852366.1| | 11099 | g30483 | i0 | 97.714 | 67.0873015873016 | 175 | 4 | 65 | 0 | 72 | 246 | 203 | 29 | Bovine viral diarrhea virus 1 isolate S1118 E2 glycoprotein gene, partial cds | blastn | 25359 | 302 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 3093261 | 3093261 | PRJNA558770_P_NODE_57743_length_275_cov_7.458333_g55739_i0 | PRJNA558770 | 57743 | 275 | 7.458333 | 20.51041575 | Pestivirus bovis | 3052619 | Viruses | Viruses | 178 | 4e-40 | NTclustered | gi|1129880023|gb|KX170379.1| | 11099 | g55739 | i0 | 94.017 | 41.1527272727273 | 117 | 7 | 43 | 0 | 159 | 275 | 477 | 593 | Bovine viral diarrhea virus 1 isolate V020 NS2 gene, partial cds | blastn | 11317 | 178 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 3093263 | 3093263 | PRJNA558770_P_NODE_5783_length_702_cov_19.836582_g232_i4 | PRJNA558770 | 5783 | 702 | 19.836582 | 139.25280564 | Pestivirus bovis | 3052619 | Viruses | Viruses | 1101 | 0 | NTclustered | gi|1129880209|gb|KX170472.1| | 11099 | g232 | i4 | 99.023 | 89.0897435897436 | 614 | 6 | 87 | 0 | 1 | 614 | 1612 | 999 | Bovine viral diarrhea virus 1 isolate V099 NS3 gene, partial cds | blastn | 62541 | 1101 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 3093423 | 3093423 | PRJNA558770_P_NODE_64543_length_259_cov_12.138393_g62538_i0 | PRJNA558770 | 64543 | 259 | 12.138393 | 31.43843787 | Pestivirus bovis | 3052619 | Viruses | Viruses | 180 | 1.04e-40 | NTclustered | gi|2040746277|gb|MT654137.1| | 11099 | g62538 | i0 | 99 | 25.7142857142857 | 100 | 1 | 66 | 0 | 160 | 259 | 1665 | 1566 | Bovine viral diarrhea virus 1 strain 20-8536, complete genome | blastn | 6660 | 180 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 3680317 | 3680317 | PRJNA558770_P_NODE_199703_length_234_cov_3.793970_g197698_i0 | PRJNA558770 | 199703 | 234 | 3.79397 | 8.8778898 | root | 1 | Root_unresolved | Root_unresolved | 121 | 5.66e-23 | NTclustered | gi|633265981|gb|KJ541471.1| | 11099 | g197698 | i0 | 95.946 | 9.05555555555556 | 74 | 3 | 32 | 0 | 2 | 75 | 7330 | 7403 | Bovine viral diarrhea virus 1 isolate GS5, complete genome | blastn | 2119 | 121 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 3681239 | 3681239 | PRJNA558770_P_NODE_395123_length_160_cov_0.936000_g393118_i0 | PRJNA558770 | 395123 | 160 | 0.936 | 1.4976 | Pestivirus | 11095 | Viruses | Viruses | 268 | 1.21e-67 | NTclustered | gi|802875365|gb|KP057803.2| | 54315 | g393118 | i0 | 96.875 | 99.96875 | 160 | 5 | 100 | 0 | 1 | 160 | 6753 | 6912 | Bovine viral diarrhea virus 2 strain 24515 polyprotein gene, complete cds | blastn | 15995 | 268 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 3681322 | 3681322 | PRJNA558770_P_NODE_47243_length_312_cov_8.559567_g45241_i0 | PRJNA558770 | 47243 | 312 | 8.559567 | 26.70584904 | Pestivirus | 11095 | Viruses | Viruses | 303 | 7.29e-78 | NTclustered | gi|2149466|gb|U86599.1|PTU86599 | 11099 | g45241 | i0 | 97.207 | 95.5224358974359 | 179 | 5 | 100 | 0 | 1 | 179 | 1439 | 1617 | Pestivirus type 1 cytopathic genomic RNA, complete genome | blastn | 29803 | 303 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 3681450 | 3681450 | PRJNA558770_P_NODE_63303_length_262_cov_6.955947_g61298_i0 | PRJNA558770 | 63303 | 262 | 6.955947 | 18.22458114 | Pestivirus | 11095 | Viruses | Viruses | 159 | 1.37e-34 | NTclustered | gi|1786707920|gb|MN188074.1| | 11099 | g61298 | i0 | 94.231 | 52.8206106870229 | 104 | 6 | 40 | 0 | 1 | 104 | 2268 | 2371 | Bovine viral diarrhea virus 1 strain PI285, complete genome | blastn | 13839 | 159 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 3681647 | 3681647 | PRJNA558770_P_NODE_9903_length_581_cov_13.613553_g8341_i0 | PRJNA558770 | 9903 | 581 | 13.613553 | 79.09474293 | Pestivirus | 11095 | Viruses | Viruses | 346 | 2.35e-90 | NTclustered | gi|1350888790|gb|KY852366.1| | 11099 | g8341 | i0 | 97.99 | 49.0051635111876 | 199 | 4 | 72 | 0 | 133 | 331 | 29 | 227 | Bovine viral diarrhea virus 1 isolate S1118 E2 glycoprotein gene, partial cds | blastn | 28472 | 346 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 4365247 | 4365247 | PRJNA558770_P_NODE_137884_length_234_cov_7.371859_g135879_i0 | PRJNA558770 | 137884 | 234 | 7.371859 | 17.25015006 | Pestivirus bovis | 3052619 | Viruses | Viruses | 110 | 1.23e-19 | NTclustered | gi|633265981|gb|KJ541471.1| | 11099 | g135879 | i0 | 93.243 | 3.02136752136752 | 74 | 5 | 32 | 0 | 1 | 74 | 3719 | 3646 | Bovine viral diarrhea virus 1 isolate GS5, complete genome | blastn | 707 | 110 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 4365407 | 4365407 | PRJNA558770_P_NODE_145264_length_234_cov_6.768844_g143259_i0 | PRJNA558770 | 145264 | 234 | 6.768844 | 15.83909496 | Pestivirus bovis | 3052619 | Viruses | Viruses | 141 | 4.35e-29 | NTclustered | gi|2858850691|gb|PQ613779.1| | 11099 | g143259 | i0 | 100 | 33.8205128205128 | 76 | 0 | 65 | 0 | 1 | 76 | 7530 | 7605 | Bovine viral diarrhea virus 1 isolate USMARC/PI-86-21/Serum polyprotein gene, complete cds | blastn | 7914 | 141 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 4368693 | 4368693 | PRJNA558770_P_NODE_356704_length_232_cov_10.350254_g354699_i0 | PRJNA558770 | 356704 | 232 | 10.350254 | 24.01258928 | Pestivirus tauri | 3052626 | Viruses | Viruses | 167 | 7.1e-37 | NTclustered | gi|1540352871|gb|MH231127.1| | 54315 | g354699 | i0 | 97.917 | 41.625 | 96 | 2 | 41 | 0 | 2 | 97 | 8105 | 8200 | Bovine viral diarrhea virus 2 isolate 53637c polyprotein gene, complete cds | blastn | 9657 | 167 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 4368979 | 4368979 | PRJNA558770_P_NODE_38644_length_343_cov_3.704545_g36651_i0 | PRJNA558770 | 38644 | 343 | 3.704545 | 12.70658935 | Pestivirus bovis | 3052619 | Viruses | Viruses | 569 | 7.239999999999998e-158 | NTclustered | gi|1129880467|gb|KX170601.1| | 11099 | g36651 | i0 | 96.774 | 99.4110787172012 | 341 | 11 | 99 | 0 | 2 | 342 | 646 | 306 | Bovine viral diarrhea virus 1 isolate V100 NS5A gene, partial cds | blastn | 34098 | 569 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 4369946 | 4369946 | PRJNA558770_P_NODE_67944_length_252_cov_10.557604_g65939_i0 | PRJNA558770 | 67944 | 252 | 10.557604 | 26.60516208 | Pestivirus bovis | 3052619 | Viruses | Viruses | 171 | 6.05e-38 | NTclustered | gi|2858850717|gb|PQ613792.1| | 11099 | g65939 | i0 | 100 | 62.8174603174603 | 92 | 0 | 69 | 0 | 1 | 92 | 7870 | 7779 | Bovine viral diarrhea virus 1 isolate USMARC/PI-91-21/MDBK polyprotein gene, complete cds | blastn | 15830 | 171 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 4957925 | 4957925 | PRJNA558770_P_NODE_386824_length_188_cov_3.875817_g384819_i0 | PRJNA558770 | 386824 | 188 | 3.875817 | 7.28653596 | Pestivirus | 11095 | Viruses | Viruses | 326 | 8.6e-85 | NTclustered | gi|1707003|gb|U63513.1|BVU63513 | 11099 | g384819 | i0 | 97.872 | 99.9946808510638 | 188 | 4 | 100 | 0 | 1 | 188 | 959 | 772 | Bovine viral diarrhea virus noncytopathogenic strain NCP7, polyprotein gene, E2 region to NS4B, partial cds | blastn | 18799 | 326 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 5640865 | 5640865 | PRJNA558770_P_NODE_10245_length_574_cov_10.636364_g8669_i0 | PRJNA558770 | 10245 | 574 | 10.636364 | 61.05272936 | Pestivirus bovis | 3052619 | Viruses | Viruses | 542 | 2.76e-149 | NTclustered | gi|1129880093|gb|KX170414.1| | 11099 | g8669 | i0 | 96.049 | 55.6637630662021 | 329 | 7 | 79 | 1 | 2 | 330 | 411 | 733 | Bovine viral diarrhea virus 1 isolate V099 NS2 gene, partial cds | blastn | 31951 | 542 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 5644351 | 5644351 | PRJNA558770_P_NODE_2825_length_904_cov_23.415420_g1956_i0 | PRJNA558770 | 2825 | 904 | 23.41542 | 211.6753968 | Pestivirus bovis | 3052619 | Viruses | Viruses | 647 | 0 | NTclustered | gi|1129880619|gb|KX170677.1| | 11099 | g1956 | i0 | 100 | 62.5431415929204 | 350 | 0 | 80 | 0 | 343 | 692 | 1515 | 1166 | Bovine viral diarrhea virus 1 isolate V099 NS5B gene, partial cds | blastn | 56539 | 647 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 5645414 | 5645414 | PRJNA558770_P_NODE_385325_length_194_cov_7.635220_g383320_i0 | PRJNA558770 | 385325 | 194 | 7.63522 | 14.8123268 | Pestivirus bovis | 3052619 | Viruses | Viruses | 289 | 1.17e-73 | NTclustered | gi|2086549820|dbj|LC648259.1| | 981676 | g383320 | i0 | 93.75 | 99.2628865979381 | 192 | 12 | 99 | 0 | 3 | 194 | 267 | 76 | Bovine viral diarrhea virus 1b BVDV/Shihoro/O_39 gene for structural glycoprotein E2, partial cds | blastn | 19257 | 289 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 5645580 | 5645580 | PRJNA558770_P_NODE_392345_length_168_cov_13.000000_g390340_i0 | PRJNA558770 | 392345 | 168 | 13 | 21.84 | Pestivirus bovis | 3052619 | Viruses | Viruses | 311 | 2.11e-80 | NTclustered | gi|1129880209|gb|KX170472.1| | 11099 | g390340 | i0 | 100 | 91.8214285714286 | 168 | 0 | 100 | 0 | 1 | 168 | 561 | 394 | Bovine viral diarrhea virus 1 isolate V099 NS3 gene, partial cds | blastn | 15426 | 311 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 6232581 | 6232581 | PRJNA558770_P_NODE_1865_length_1042_cov_24.526316_g232_i2 | PRJNA558770 | 1865 | 1042 | 24.526316 | 255.56421272 | Pestivirus | 11095 | Viruses | Viruses | 1352 | 0 | NTclustered | gi|2789676|gb|AF041040.1|AF041040 | 11099 | g232 | i2 | 95.508 | 82.7072936660269 | 846 | 38 | 81 | 0 | 197 | 1042 | 7003 | 7848 | Pestivirus type 1 polyprotein gene, complete cds | blastn | 86181 | 1358 | 0.995581737849779 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 6233798 | 6233798 | PRJNA558770_P_NODE_72325_length_244_cov_5.119617_g70320_i0 | PRJNA558770 | 72325 | 244 | 5.119617 | 12.49186548 | Pestivirus | 11095 | Viruses | Viruses | 161 | 3.5e-35 | NTclustered | gi|800924328|gb|KP941589.1| | 11099 | g70320 | i0 | 98.889 | 65.0081967213115 | 90 | 1 | 37 | 0 | 155 | 244 | 7406 | 7317 | Bovine viral diarrhea virus 1 strain USMARC-55923 polyprotein gene, complete cds | blastn | 15862 | 161 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 6918691 | 6918691 | PRJNA558770_P_NODE_293286_length_234_cov_1.477387_g291281_i0 | PRJNA558770 | 293286 | 234 | 1.477387 | 3.45708558 | Pestivirus bovis | 3052619 | Viruses | Viruses | 117 | 7.33e-22 | NTclustered | gi|2040746277|gb|MT654137.1| | 11099 | g291281 | i0 | 97.101 | 8.69230769230769 | 69 | 2 | 29 | 0 | 7 | 75 | 4247 | 4179 | Bovine viral diarrhea virus 1 strain 20-8536, complete genome | blastn | 2034 | 117 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 6920645 | 6920645 | PRJNA558770_P_NODE_7046_length_654_cov_15.869144_g5686_i0 | PRJNA558770 | 7046 | 654 | 15.869144 | 103.78420176 | Pestivirus bovis | 3052619 | Viruses | Viruses | 274 | 1.28e-68 | NTclustered | gi|800924316|gb|KP941583.1| | 11099 | g5686 | i0 | 95.858 | 62.6223241590214 | 169 | 7 | 57 | 0 | 329 | 497 | 3629 | 3797 | Bovine viral diarrhea virus 1 strain USMARC-53874 polyprotein gene, complete cds | blastn | 40955 | 274 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 7507816 | 7507816 | PRJNA558770_P_NODE_38106_length_345_cov_19.432258_g36116_i0 | PRJNA558770 | 38106 | 345 | 19.432258 | 67.0412901 | Pestivirus | 11095 | Viruses | Viruses | 534 | 2.66e-147 | NTclustered | gi|404363563|gb|JX419398.1| | 11099 | g36116 | i0 | 94.186 | 99.7101449275362 | 344 | 17 | 99 | 1 | 2 | 345 | 9038 | 9378 | Bovine viral diarrhea virus 1 polyprotein gene, complete cds | blastn | 34400 | 534 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 7507931 | 7507931 | PRJNA558770_P_NODE_42726_length_325_cov_5.879310_g40728_i0 | PRJNA558770 | 42726 | 325 | 5.87931 | 19.1077575 | Pestivirus | 11095 | Viruses | Viruses | 527 | 4.1599999999999984e-145 | NTclustered | gi|77799875|dbj|AB111961.2| | 233883 | g40728 | i0 | 95.988 | 99.6615384615385 | 324 | 13 | 99 | 0 | 1 | 324 | 1207 | 884 | Bovine viral diarrhea virus 799ncp gene for poryprotein, partai cds, strain: 799ncp | blastn | 32390 | 527 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 7508006 | 7508006 | PRJNA558770_P_NODE_506_length_1732_cov_23.017678_g232_i0 | PRJNA558770 | 506 | 1732 | 23.017678 | 398.66618296 | Pestivirus | 11095 | Viruses | Viruses | 1637 | 0 | NTclustered | gi|2789676|gb|AF041040.1|AF041040 | 11099 | g232 | i0 | 95.593 | 94.6737875288684 | 1021 | 45 | 98 | 0 | 1 | 1021 | 7848 | 6828 | Pestivirus type 1 polyprotein gene, complete cds | blastn | 163975 | 1642 | 0.996954933008526 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 8190507 | 8190507 | PRJNA558770_P_NODE_12647_length_531_cov_4.030242_g10971_i0 | PRJNA558770 | 12647 | 531 | 4.030242 | 21.40058502 | Pestivirus bovis | 3052619 | Viruses | Viruses | 667 | 0 | NTclustered | gi|1129879919|gb|KX170327.1| | 11099 | g10971 | i0 | 100 | 88.9303201506591 | 361 | 0 | 79 | 0 | 99 | 459 | 144 | 504 | Bovine viral diarrhea virus 1 isolate V099 Npro gene, partial cds | blastn | 47222 | 667 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 8782354 | 8782354 | PRJNA558770_P_NODE_265247_length_234_cov_1.994975_g263242_i0 | PRJNA558770 | 265247 | 234 | 1.994975 | 4.6682415 | Pestivirus | 11095 | Viruses | Viruses | 139 | 1.56e-28 | NTclustered | gi|386285714|gb|JQ418635.1| | 54315 | g263242 | i0 | 100 | 44.1025641025641 | 75 | 0 | 32 | 0 | 1 | 75 | 9916 | 9842 | Bovine viral diarrhea virus 2 isolate 08Q723 polyprotein gene, complete cds | blastn | 10320 | 139 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 8782964 | 8782964 | PRJNA558770_P_NODE_51687_length_297_cov_22.255725_g49684_i0 | PRJNA558770 | 51687 | 297 | 22.255725 | 66.09950325 | Pestivirus | 11095 | Viruses | Viruses | 449 | 8.37e-122 | NTclustered | gi|1628570|gb|U63512.1|BVU63512 | 11099 | g49684 | i0 | 92.715 | 101.62962962963 | 302 | 17 | 100 | 2 | 1 | 297 | 2236 | 1935 | Bovine viral diarrhea virus cytopathogenic strain CP7, polyprotein gene, E2 region to NS4B, partial cds | blastn | 30184 | 449 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 9466893 | 9466893 | PRJNA558770_P_NODE_155188_length_234_cov_6.065327_g153183_i0 | PRJNA558770 | 155188 | 234 | 6.065327 | 14.19286518 | Pestivirus bovis | 3052619 | Viruses | Viruses | 178 | 3.31e-40 | NTclustered | gi|1129880023|gb|KX170379.1| | 11099 | g153183 | i0 | 94.017 | 36.2435897435897 | 117 | 7 | 50 | 0 | 118 | 234 | 477 | 593 | Bovine viral diarrhea virus 1 isolate V020 NS2 gene, partial cds | blastn | 8481 | 178 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 9470171 | 9470171 | PRJNA558770_P_NODE_38568_length_343_cov_8.977273_g36575_i0 | PRJNA558770 | 38568 | 343 | 8.977273 | 30.79204639 | Pestivirus bovis | 3052619 | Viruses | Viruses | 169 | 3.0899999999999997e-37 | NTclustered | gi|1129880013|gb|KX170374.1| | 11099 | g36575 | i0 | 97.938 | 12.9212827988338 | 97 | 2 | 50 | 0 | 1 | 97 | 652 | 556 | Bovine viral diarrhea virus 1 isolate V045 NS2 gene, partial cds | blastn | 4432 | 169 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 10057167 | 10057167 | PRJNA558770_P_NODE_122468_length_234_cov_8.914573_g120463_i0 | PRJNA558770 | 122468 | 234 | 8.914573 | 20.86010082 | Pestivirus | 11095 | Viruses | Viruses | 128 | 3.38e-25 | NTclustered | gi|800924334|gb|KP941592.1| | 11099 | g120463 | i0 | 97.333 | 32.2863247863248 | 75 | 2 | 32 | 0 | 160 | 234 | 9149 | 9075 | Bovine viral diarrhea virus 1 strain USMARC-55926 polyprotein gene, complete cds | blastn | 7555 | 128 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 10058585 | 10058585 | PRJNA558770_P_NODE_50668_length_301_cov_29.191729_g48665_i0 | PRJNA558770 | 50668 | 301 | 29.191729 | 87.86710429 | Pestivirus | 11095 | Viruses | Viruses | 370 | 6.81e-98 | NTclustered | gi|1540352923|gb|MH231153.1| | 11099 | g48665 | i0 | 98.113 | 78.671096345515 | 212 | 4 | 96 | 0 | 90 | 301 | 5274 | 5485 | Bovine viral diarrhea virus 1 isolate Nebraska polyprotein gene, complete cds | blastn | 23680 | 370 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 10744670 | 10744670 | PRJNA558770_P_NODE_273669_length_234_cov_1.839196_g271664_i0 | PRJNA558770 | 273669 | 234 | 1.839196 | 4.30371864 | Pestivirus tauri | 3052626 | Viruses | Viruses | 134 | 7.28e-27 | NTclustered | gi|238801275|gb|GQ144318.1| | 54315 | g271664 | i0 | 98.667 | 42.1239316239316 | 75 | 1 | 62 | 0 | 1 | 75 | 409 | 335 | Bovine viral diarrhea virus 2 strain TR-2006-3 nonfunctional polyprotein gene, partial sequence | blastn | 9857 | 134 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 10745009 | 10745009 | PRJNA558770_P_NODE_29769_length_393_cov_3.178771_g27801_i0 | PRJNA558770 | 29769 | 393 | 3.178771 | 12.49257003 | Pestivirus bovis | 3052619 | Viruses | Viruses | 388 | 2.52e-103 | NTclustered | gi|2625903273|gb|ON676187.1| | 11099 | g27801 | i0 | 96.581 | 75.4223918575064 | 234 | 8 | 77 | 0 | 1 | 234 | 4500 | 4267 | Bovine viral diarrhea virus 1 strain Chilgok, complete genome | blastn | 29641 | 388 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 10745221 | 10745221 | PRJNA558770_P_NODE_31249_length_386_cov_5.173789_g29273_i0 | PRJNA558770 | 31249 | 386 | 5.173789 | 19.97082554 | Pestivirus bovis | 3052619 | Viruses | Viruses | 220 | 9.55e-53 | NTclustered | gi|77799877|dbj|AB111962.2| | 233884 | g29273 | i0 | 94.406 | 47.8238341968912 | 143 | 8 | 53 | 0 | 182 | 324 | 8690 | 8548 | Bovine viral diarrhea virus 799cp gene for poryprotein, partai cds, strain: 799cp | blastn | 18460 | 220 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 11332553 | 11332553 | PRJNA558770_P_NODE_261449_length_234_cov_2.070352_g259444_i0 | PRJNA558770 | 261449 | 234 | 2.070352 | 4.84462368 | Pestivirus | 11095 | Viruses | Viruses | 126 | 1.22e-24 | NTclustered | gi|1129880117|gb|KX170426.1| | 11099 | g259444 | i0 | 97.297 | 11.8974358974359 | 74 | 2 | 32 | 0 | 3 | 76 | 214 | 287 | Bovine viral diarrhea virus 1 isolate V100 NS3 gene, partial cds | blastn | 2784 | 126 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 12016325 | 12016325 | PRJNA558770_P_NODE_11510_length_550_cov_11.260194_g9872_i0 | PRJNA558770 | 11510 | 550 | 11.260194 | 61.931067 | Pestivirus bovis | 3052619 | Viruses | Viruses | 300 | 1.75e-76 | NTclustered | gi|1350888790|gb|KY852366.1| | 11099 | g9872 | i0 | 97.701 | 43.3836363636364 | 174 | 4 | 32 | 0 | 245 | 418 | 202 | 29 | Bovine viral diarrhea virus 1 isolate S1118 E2 glycoprotein gene, partial cds | blastn | 23861 | 300 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 12016407 | 12016407 | PRJNA558770_P_NODE_11830_length_545_cov_5.529412_g10182_i0 | PRJNA558770 | 11830 | 545 | 5.529412 | 30.1352954 | Pestivirus bovis | 3052619 | Viruses | Viruses | 220 | 1.3899999999999997e-52 | NTclustered | gi|77799877|dbj|AB111962.2| | 233884 | g10182 | i0 | 94.406 | 38.5724770642202 | 143 | 8 | 38 | 0 | 341 | 483 | 8690 | 8548 | Bovine viral diarrhea virus 799cp gene for poryprotein, partai cds, strain: 799cp | blastn | 21022 | 220 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 12018439 | 12018439 | PRJNA558770_P_NODE_21410_length_434_cov_10.849624_g19510_i0 | PRJNA558770 | 21410 | 434 | 10.849624 | 47.08736816 | Pestivirus tauri | 3052626 | Viruses | Viruses | 422 | 2.77e-113 | NTclustered | gi|1129880459|gb|KX170597.1| | 54315 | g19510 | i0 | 97.571 | 74.9838709677419 | 247 | 5 | 57 | 1 | 2 | 247 | 1130 | 1376 | Bovine viral diarrhea virus 2 isolate V085 NS5A gene, partial cds | blastn | 32543 | 422 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 12019088 | 12019088 | PRJNA558770_P_NODE_251770_length_234_cov_2.271357_g249765_i0 | PRJNA558770 | 251770 | 234 | 2.271357 | 5.31497538 | Pestivirus tauri | 3052626 | Viruses | Viruses | 135 | 2.02e-27 | NTclustered | gi|1129879523|gb|KX170129.1| | 54315 | g249765 | i0 | 100 | 35.3376068376068 | 73 | 0 | 61 | 0 | 3 | 75 | 666 | 594 | Bovine viral diarrhea virus 2 isolate V047 E2 gene, partial cds | blastn | 8269 | 135 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 12021107 | 12021107 | PRJNA558770_P_NODE_4550_length_766_cov_11.518468_g1080_i1 | PRJNA558770 | 4550 | 766 | 11.518468 | 88.23146488 | Pestivirus bovis | 3052619 | Viruses | Viruses | 616 | 2.17e-171 | NTclustered | gi|1129879811|gb|KX170273.1| | 11099 | g1080 | i1 | 99.12 | 57.5835509138381 | 341 | 3 | 72 | 0 | 4 | 344 | 447 | 107 | Bovine viral diarrhea virus 1 isolate V099 Erns gene, partial cds | blastn | 44109 | 616 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 12607726 | 12607726 | PRJNA558770_P_NODE_14190_length_507_cov_12.705508_g12460_i0 | PRJNA558770 | 14190 | 507 | 12.705508 | 64.41692556 | Pestivirus | 11095 | Viruses | Viruses | 881 | 0 | NTclustered | gi|530291193|gb|KC963967.1| | 11099 | g12460 | i0 | 98.214 | 96.8185404339251 | 504 | 9 | 99 | 0 | 1 | 504 | 574 | 71 | Bovine viral diarrhea virus 1 isolate 12F004, complete genome | blastn | 49087 | 881 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 12608916 | 12608916 | PRJNA558770_P_NODE_40890_length_332_cov_27.713805_g38894_i0 | PRJNA558770 | 40890 | 332 | 27.713805 | 92.0098326 | Pestivirus | 11095 | Viruses | Viruses | 370 | 7.6e-98 | NTclustered | gi|1540352923|gb|MH231153.1| | 11099 | g38894 | i0 | 98.113 | 80.1927710843374 | 212 | 4 | 64 | 0 | 121 | 332 | 5485 | 5274 | Bovine viral diarrhea virus 1 isolate Nebraska polyprotein gene, complete cds | blastn | 26624 | 370 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 12608946 | 12608946 | PRJNA558770_P_NODE_44050_length_320_cov_7.126316_g42052_i0 | PRJNA558770 | 44050 | 320 | 7.126316 | 22.8042112 | Pestivirus | 11095 | Viruses | Viruses | 532 | 8.79e-147 | NTclustered | gi|1707003|gb|U63513.1|BVU63513 | 11099 | g42052 | i0 | 97.152 | 99.690625 | 316 | 8 | 98 | 1 | 3 | 317 | 1067 | 1382 | Bovine viral diarrhea virus noncytopathogenic strain NCP7, polyprotein gene, E2 region to NS4B, partial cds | blastn | 31901 | 532 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 13292133 | 13292133 | PRJNA558770_P_NODE_147331_length_234_cov_6.613065_g145326_i0 | PRJNA558770 | 147331 | 234 | 6.613065 | 15.4745721 | Pestivirus tauri | 3052626 | Viruses | Viruses | 239 | 1.4999999999999999e-58 | NTclustered | gi|1129880105|gb|KX170420.1| | 54315 | g145326 | i0 | 98.519 | 62.957264957265 | 135 | 2 | 90 | 0 | 1 | 135 | 1508 | 1642 | Bovine viral diarrhea virus 2 isolate V047 NS3 gene, partial cds | blastn | 14732 | 239 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 13296114 | 13296114 | PRJNA558770_P_NODE_47071_length_313_cov_6.338129_g45069_i0 | PRJNA558770 | 47071 | 313 | 6.338129 | 19.83834377 | Pestivirus bovis | 3052619 | Viruses | Viruses | 512 | 1.12e-140 | NTclustered | gi|1129880481|gb|KX170608.1| | 11099 | g45069 | i0 | 96.166 | 99.964856230032 | 313 | 12 | 100 | 0 | 1 | 313 | 32 | 344 | Bovine viral diarrhea virus 1 isolate V031 NS5A gene, partial cds | blastn | 31289 | 512 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 13296461 | 13296461 | PRJNA558770_P_NODE_60531_length_268_cov_13.454936_g58526_i0 | PRJNA558770 | 60531 | 268 | 13.454936 | 36.05922848 | Pestivirus tauri | 3052626 | Viruses | Viruses | 195 | 3.85e-45 | NTclustered | gi|998226328|gb|KT832819.1| | 54315 | g58526 | i0 | 99.074 | 53.7126865671642 | 108 | 1 | 68 | 0 | 161 | 268 | 7323 | 7216 | Bovine viral diarrhea virus 2 strain USMARC-60766, complete genome | blastn | 14395 | 195 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 13296652 | 13296652 | PRJNA558770_P_NODE_6811_length_662_cov_8.985646_g5474_i0 | PRJNA558770 | 6811 | 662 | 8.985646 | 59.48497652 | Pestivirus bovis | 3052619 | Viruses | Viruses | 1044 | 0 | NTclustered | gi|1129880619|gb|KX170677.1| | 11099 | g5474 | i0 | 98.642 | 91.3640483383686 | 589 | 8 | 89 | 0 | 4 | 592 | 503 | 1091 | Bovine viral diarrhea virus 1 isolate V099 NS5B gene, partial cds | blastn | 60483 | 1044 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 13882594 | 13882594 | PRJNA558770_P_NODE_136351_length_234_cov_7.512563_g134346_i0 | PRJNA558770 | 136351 | 234 | 7.512563 | 17.57939742 | Pestivirus | 11095 | Viruses | Viruses | 134 | 7.28e-27 | NTclustered | gi|1408941648|gb|MH379222.1| | 11099 | g134346 | i0 | 98.667 | 32.2393162393162 | 75 | 1 | 32 | 0 | 1 | 75 | 6952 | 6878 | Bovine viral diarrhea virus 1 isolate P2 polyprotein gene, partial cds | blastn | 7544 | 134 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 13883761 | 13883761 | PRJNA558770_P_NODE_392231_length_169_cov_2.619403_g390226_i0 | PRJNA558770 | 392231 | 169 | 2.619403 | 4.42679107 | Pestivirus | 11095 | Viruses | Viruses | 305 | 9.81e-79 | NTclustered | gi|386285714|gb|JQ418635.1| | 54315 | g390226 | i0 | 99.405 | 61.5029585798817 | 168 | 1 | 99 | 0 | 2 | 169 | 4342 | 4175 | Bovine viral diarrhea virus 2 isolate 08Q723 polyprotein gene, complete cds | blastn | 10394 | 305 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 13884153 | 13884153 | PRJNA558770_P_NODE_92571_length_234_cov_14.562814_g90566_i0 | PRJNA558770 | 92571 | 234 | 14.562814 | 34.07698476 | Tobamovirus | 12234 | Viruses | Viruses | 141 | 4.35e-29 | NTclustered | gi|139866184|dbj|AB276030.1| | 12239 | g90566 | i0 | 100 | 53.4700854700855 | 76 | 0 | 64 | 0 | 159 | 234 | 223 | 298 | Pepper mild mottle virus genomic RNA, complete genome, strain: L4BV | blastn | 12512 | 141 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Martellivirales | Virgaviridae | Tobamovirus | Tobamovirus capsici | ||
| 14567741 | 14567741 | PRJNA558770_P_NODE_17772_length_465_cov_15.625581_g15944_i0 | PRJNA558770 | 17772 | 465 | 15.625581 | 72.65895165 | Pestivirus bovis | 3052619 | Viruses | Viruses | 300 | 1.46e-76 | NTclustered | gi|1350888790|gb|KY852366.1| | 11099 | g15944 | i0 | 97.701 | 50.8322580645161 | 174 | 4 | 37 | 0 | 133 | 306 | 29 | 202 | Bovine viral diarrhea virus 1 isolate S1118 E2 glycoprotein gene, partial cds | blastn | 23637 | 300 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 14569147 | 14569147 | PRJNA558770_P_NODE_256572_length_234_cov_2.165829_g254567_i0 | PRJNA558770 | 256572 | 234 | 2.165829 | 5.06803986 | Pestivirus bovis | 3052619 | Viruses | Viruses | 134 | 7.28e-27 | NTclustered | gi|887497285|gb|KR029825.1| | 11099 | g254567 | i0 | 98.667 | 37.0598290598291 | 75 | 1 | 32 | 0 | 159 | 233 | 1635 | 1561 | Bovine viral diarrhea virus 1 isolate Egy/Ismailia/2014, complete genome | blastn | 8672 | 134 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 14569422 | 14569422 | PRJNA558770_P_NODE_276112_length_234_cov_1.798995_g274107_i0 | PRJNA558770 | 276112 | 234 | 1.798995 | 4.2096483 | Triticeae associated alphaendornavirus | 2789206 | Viruses | Viruses | 139 | 1.56e-28 | NTclustered | gi|2232450943|gb|MW423406.1| | 2789206 | g274107 | i0 | 100 | 5.36324786324786 | 75 | 0 | 64 | 0 | 1 | 75 | 272 | 346 | Triticeae associated alphaendornavirus isolate Korea_1 polyprotein (ORF1) gene, partial cds | blastn | 1255 | 139 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Martellivirales | Endornaviridae | Alphaendornavirus | Triticeae associated alphaendornavirus | ||
| 14571409 | 14571409 | PRJNA558770_P_NODE_62772_length_263_cov_10.675439_g60767_i0 | PRJNA558770 | 62772 | 263 | 10.675439 | 28.07640457 | Pestivirus bovis | 3052619 | Viruses | Viruses | 222 | 1.73e-53 | NTclustered | gi|2553477538|gb|OR004812.1| | 11099 | g60767 | i0 | 97.674 | 78.2205323193916 | 129 | 3 | 49 | 0 | 134 | 262 | 9642 | 9514 | Bovine viral diarrhea virus 1 isolate TJ2108, complete genome | blastn | 20572 | 222 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 14571465 | 14571465 | PRJNA558770_P_NODE_65332_length_258_cov_2.031390_g63327_i0 | PRJNA558770 | 65332 | 258 | 2.03139 | 5.2409862 | Pestivirus bovis | 3052619 | Viruses | Viruses | 167 | 8.04e-37 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g63327 | i0 | 97.917 | 43.1472868217054 | 96 | 2 | 65 | 0 | 160 | 255 | 7502 | 7597 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 11132 | 167 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 15158080 | 15158080 | PRJNA558770_P_NODE_52952_length_292_cov_8.793774_g50949_i0 | PRJNA558770 | 52952 | 292 | 8.793774 | 25.67782008 | Pestivirus | 11095 | Viruses | Viruses | 510 | 3.71e-140 | NTclustered | gi|1540352891|gb|MH231137.1| | 54315 | g50949 | i0 | 98.282 | 99.3561643835616 | 291 | 5 | 99 | 0 | 2 | 292 | 6695 | 6985 | Bovine viral diarrhea virus 2 isolate MadSpl polyprotein gene, complete cds | blastn | 29012 | 510 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 15158089 | 15158089 | PRJNA558770_P_NODE_5452_length_717_cov_9.246334_g4247_i0 | PRJNA558770 | 5452 | 717 | 9.246334 | 66.29621478 | Pestivirus | 11095 | Viruses | Viruses | 749 | 0 | NTclustered | gi|642598|gb|L35851.1|BVDP125D | 11099 | g4247 | i0 | 93.452 | 85.9232914923292 | 504 | 33 | 95 | 0 | 1 | 504 | 74 | 577 | Bovine viral diarrhea virus (strain Oregon) p125 gene, partial cds | blastn | 61607 | 749 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 15841628 | 15841628 | PRJNA558770_P_NODE_18173_length_461_cov_22.687793_g16340_i0 | PRJNA558770 | 18173 | 461 | 22.687793 | 104.59072573 | Pestivirus bovis | 3052619 | Viruses | Viruses | 684 | 0 | NTclustered | gi|2858850729|gb|PQ613798.1| | 11099 | g16340 | i0 | 92.421 | 94.0412147505423 | 475 | 22 | 100 | 2 | 1 | 461 | 11255 | 10781 | Bovine viral diarrhea virus 1 isolate USMARC/PI-92-21/Serum polyprotein gene, complete cds | blastn | 43353 | 684 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 15843248 | 15843248 | PRJNA558770_P_NODE_276973_length_234_cov_1.783920_g274968_i0 | PRJNA558770 | 276973 | 234 | 1.78392 | 4.1743728 | Pestivirus bovis | 3052619 | Viruses | Viruses | 130 | 9.41e-26 | NTclustered | gi|800924318|gb|KP941584.1| | 11099 | g274968 | i0 | 97.368 | 13.7820512820513 | 76 | 2 | 65 | 0 | 1 | 76 | 3768 | 3843 | Bovine viral diarrhea virus 1 strain USMARC-53875 polyprotein gene, complete cds | blastn | 3225 | 130 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 16432659 | 16432659 | PRJNA558770_P_NODE_394593_length_161_cov_9.047619_g392588_i0 | PRJNA558770 | 394593 | 161 | 9.047619 | 14.56666659 | Pestivirus | 11095 | Viruses | Viruses | 259 | 7.34e-65 | NTclustered | gi|1408941648|gb|MH379222.1| | 11099 | g392588 | i0 | 96.203 | 98.0621118012422 | 158 | 6 | 98 | 0 | 1 | 158 | 1403 | 1246 | Bovine viral diarrhea virus 1 isolate P2 polyprotein gene, partial cds | blastn | 15788 | 259 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 17118211 | 17118211 | PRJNA558770_P_NODE_280594_length_234_cov_1.723618_g278589_i0 | PRJNA558770 | 280594 | 234 | 1.723618 | 4.03326612 | Pestivirus bovis | 3052619 | Viruses | Viruses | 134 | 7.28e-27 | NTclustered | gi|1129880377|gb|KX170556.1| | 11099 | g278589 | i0 | 98.667 | 39.5128205128205 | 75 | 1 | 64 | 0 | 1 | 75 | 229 | 303 | Bovine viral diarrhea virus 1 isolate V031 NS4B gene, partial cds | blastn | 9246 | 134 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 17118247 | 17118247 | PRJNA558770_P_NODE_28274_length_400_cov_3.747945_g26311_i0 | PRJNA558770 | 28274 | 400 | 3.747945 | 14.99178 | Pestivirus bovis | 3052619 | Viruses | Viruses | 139 | 2.86e-28 | NTclustered | gi|2858850729|gb|PQ613798.1| | 11099 | g26311 | i0 | 100 | 40.67 | 75 | 0 | 38 | 0 | 167 | 241 | 7635 | 7709 | Bovine viral diarrhea virus 1 isolate USMARC/PI-92-21/Serum polyprotein gene, complete cds | blastn | 16268 | 139 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 17118824 | 17118824 | PRJNA558770_P_NODE_3274_length_860_cov_17.043636_g232_i3 | PRJNA558770 | 3274 | 860 | 17.043636 | 146.5752696 | Pestivirus bovis | 3052619 | Viruses | Viruses | 1264 | 0 | NTclustered | gi|1129880209|gb|KX170472.1| | 11099 | g232 | i3 | 93.013 | 103.266279069767 | 873 | 48 | 100 | 6 | 1 | 860 | 740 | 1612 | Bovine viral diarrhea virus 1 isolate V099 NS3 gene, partial cds | blastn | 88809 | 1264 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 17119468 | 17119468 | PRJNA558770_P_NODE_39294_length_340_cov_3.039344_g37301_i0 | PRJNA558770 | 39294 | 340 | 3.039344 | 10.3337696 | Pestivirus bovis | 3052619 | Viruses | Viruses | 248 | 3.82e-61 | NTclustered | gi|1129879573|gb|KX170154.1| | 11099 | g37301 | i0 | 95.513 | 50.8323529411765 | 156 | 6 | 78 | 1 | 3 | 158 | 229 | 383 | Bovine viral diarrhea virus 1 isolate V078 E2 gene, partial cds | blastn | 17283 | 248 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 17120284 | 17120284 | PRJNA558770_P_NODE_67654_length_253_cov_3.550459_g65649_i0 | PRJNA558770 | 67654 | 253 | 3.550459 | 8.98266127 | Pestivirus bovis | 3052619 | Viruses | Viruses | 215 | 2.77e-51 | NTclustered | gi|1129879653|gb|KX170194.1| | 11099 | g65649 | i0 | 99.16 | 55.2924901185771 | 119 | 1 | 47 | 0 | 1 | 119 | 154 | 36 | Bovine viral diarrhea virus 1 isolate V099 E2 gene, partial cds | blastn | 13989 | 215 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 17120591 | 17120591 | PRJNA558770_P_NODE_80114_length_235_cov_3.770000_g78109_i0 | PRJNA558770 | 80114 | 235 | 3.77 | 8.8595 | Pestivirus tauri | 3052626 | Viruses | Viruses | 137 | 5.65e-28 | NTclustered | gi|1129879697|gb|KX170216.1| | 54315 | g78109 | i0 | 100 | 44.7021276595745 | 74 | 0 | 31 | 0 | 2 | 75 | 251 | 178 | Bovine viral diarrhea virus 2 isolate V097 Erns gene, partial cds | blastn | 10505 | 137 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 18389489 | 18389489 | PRJNA558770_P_NODE_12515_length_533_cov_10.658635_g10845_i0 | PRJNA558770 | 12515 | 533 | 10.658635 | 56.81052455 | Pestivirus bovis | 3052619 | Viruses | Viruses | 917 | 0 | NTclustered | gi|1129880093|gb|KX170414.1| | 11099 | g10845 | i0 | 99.799 | 95.7598499061914 | 498 | 1 | 93 | 0 | 22 | 519 | 1359 | 862 | Bovine viral diarrhea virus 1 isolate V099 NS2 gene, partial cds | blastn | 51040 | 917 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 18390267 | 18390267 | PRJNA558770_P_NODE_159195_length_234_cov_5.809045_g157190_i0 | PRJNA558770 | 159195 | 234 | 5.809045 | 13.5931653 | Alphaendornavirus capsici | 3426171 | Viruses | Viruses | 139 | 1.56e-28 | NTclustered | gi|390608729|gb|JQ951943.1| | 354328 | g157190 | i0 | 100 | 18.2264957264957 | 75 | 0 | 62 | 0 | 160 | 234 | 10256 | 10330 | Bell pepper endornavirus strain IS RNA-dependent RNA polymerase (RdRp) gene, complete cds | blastn | 4265 | 139 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Martellivirales | Endornaviridae | Alphaendornavirus | Alphaendornavirus capsici | ||
| 18391844 | 18391844 | PRJNA558770_P_NODE_244715_length_234_cov_2.427136_g242710_i0 | PRJNA558770 | 244715 | 234 | 2.427136 | 5.67949824 | Pestivirus bovis | 3052619 | Viruses | Viruses | 130 | 9.41e-26 | NTclustered | gi|323145274|gb|HQ174296.1| | 981676 | g242710 | i0 | 98.63 | 39.7692307692308 | 73 | 1 | 31 | 0 | 2 | 74 | 4901 | 4973 | Bovine viral diarrhea virus type 1b isolate 8830 polyprotein gene, complete cds | blastn | 9306 | 130 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 18392355 | 18392355 | PRJNA558770_P_NODE_278655_length_234_cov_1.753769_g276650_i0 | PRJNA558770 | 278655 | 234 | 1.753769 | 4.10381946 | Pestivirus bovis | 3052619 | Viruses | Viruses | 124 | 4.38e-24 | NTclustered | gi|226425013|gb|FJ403531.1| | 11099 | g276650 | i0 | 97.26 | 18.491452991453 | 73 | 2 | 31 | 0 | 160 | 232 | 1339 | 1267 | Bovine viral diarrhea virus 1 isolate 644-1 nonstructrual protein 5A gene, partial cds | blastn | 4327 | 124 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 18393209 | 18393209 | PRJNA558770_P_NODE_35835_length_357_cov_14.872671_g33849_i0 | PRJNA558770 | 35835 | 357 | 14.872671 | 53.09543547 | Pestivirus bovis | 3052619 | Viruses | Viruses | 311 | 5.05e-80 | NTclustered | gi|1129880129|gb|KX170432.1| | 11099 | g33849 | i0 | 88.129 | 101.21568627451 | 278 | 11 | 96 | 8 | 101 | 357 | 358 | 634 | Bovine viral diarrhea virus 1 isolate V036 NS3 gene, partial cds | blastn | 36134 | 311 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 18393305 | 18393305 | PRJNA558770_P_NODE_376195_length_228_cov_4.730570_g374190_i0 | PRJNA558770 | 376195 | 228 | 4.73057 | 10.7856996 | Pestivirus bovis | 3052619 | Viruses | Viruses | 372 | 1.37e-98 | NTclustered | gi|2040746277|gb|MT654137.1| | 11099 | g374190 | i0 | 96.053 | 100.008771929825 | 228 | 9 | 100 | 0 | 1 | 228 | 1909 | 2136 | Bovine viral diarrhea virus 1 strain 20-8536, complete genome | blastn | 22802 | 372 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 18394137 | 18394137 | PRJNA558770_P_NODE_54535_length_285_cov_36.200000_g52531_i0 | PRJNA558770 | 54535 | 285 | 36.2 | 103.17 | Pestivirus bovis | 3052619 | Viruses | Viruses | 470 | 6.129999999999999e-128 | NTclustered | gi|2858850717|gb|PQ613792.1| | 11099 | g52531 | i0 | 96.207 | 101.729824561404 | 290 | 6 | 100 | 1 | 1 | 285 | 5157 | 5446 | Bovine viral diarrhea virus 1 isolate USMARC/PI-91-21/MDBK polyprotein gene, complete cds | blastn | 28993 | 470 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 18394429 | 18394429 | PRJNA558770_P_NODE_66595_length_255_cov_5.940909_g64590_i0 | PRJNA558770 | 66595 | 255 | 5.940909 | 15.14931795 | Pestivirus bovis | 3052619 | Viruses | Viruses | 178 | 3.66e-40 | NTclustered | gi|1129880023|gb|KX170379.1| | 11099 | g64590 | i0 | 94.017 | 46.3176470588235 | 117 | 7 | 74 | 0 | 139 | 255 | 477 | 593 | Bovine viral diarrhea virus 1 isolate V020 NS2 gene, partial cds | blastn | 11811 | 178 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 18395332 | 18395332 | PRJNA558770_P_NODE_9995_length_579_cov_15.084559_g8426_i0 | PRJNA558770 | 9995 | 579 | 15.084559 | 87.33959661 | Pestivirus bovis | 3052619 | Viruses | Viruses | 427 | 8.13e-115 | NTclustered | gi|2858850729|gb|PQ613798.1| | 11099 | g8426 | i0 | 98.354 | 94.0345423143351 | 243 | 4 | 95 | 0 | 337 | 579 | 10781 | 11023 | Bovine viral diarrhea virus 1 isolate USMARC/PI-92-21/Serum polyprotein gene, complete cds | blastn | 54446 | 427 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 18981029 | 18981029 | PRJNA558770_P_NODE_315_length_2009_cov_20.852077_g135_i0 | PRJNA558770 | 315 | 2009 | 20.852077 | 418.91822693 | Pestivirus | 11095 | Viruses | Viruses | 2870 | 0 | NTclustered | gi|386285712|gb|JQ418633.1| | 11099 | g135 | i0 | 92.576 | 94.5963165754107 | 2007 | 137 | 99 | 2 | 4 | 2009 | 7655 | 9650 | Bovine viral diarrhea virus 1 isolate 08GB44-1 polyprotein gene, complete cds | blastn | 190044 | 2870 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 18981403 | 18981403 | PRJNA558770_P_NODE_44635_length_319_cov_9.580986_g42637_i0 | PRJNA558770 | 44635 | 319 | 9.580986 | 30.56334534 | Pestivirus | 11095 | Viruses | Viruses | 248 | 3.55e-61 | NTclustered | gi|2858850717|gb|PQ613792.1| | 11099 | g42637 | i0 | 94.41 | 59.6896551724138 | 161 | 9 | 50 | 0 | 1 | 161 | 2289 | 2129 | Bovine viral diarrhea virus 1 isolate USMARC/PI-91-21/MDBK polyprotein gene, complete cds | blastn | 19041 | 248 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 19663545 | 19663545 | PRJNA558770_P_NODE_11076_length_558_cov_13.950287_g9460_i0 | PRJNA558770 | 11076 | 558 | 13.950287 | 77.84260146 | Pestivirus bovis | 3052619 | Viruses | Viruses | 568 | 4.409999999999998e-157 | NTclustered | gi|2858850729|gb|PQ613798.1| | 11099 | g9460 | i0 | 98.154 | 96.8118279569892 | 325 | 6 | 97 | 0 | 234 | 558 | 10699 | 11023 | Bovine viral diarrhea virus 1 isolate USMARC/PI-92-21/Serum polyprotein gene, complete cds | blastn | 54021 | 568 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 19665137 | 19665137 | PRJNA558770_P_NODE_180576_length_234_cov_4.618090_g178571_i0 | PRJNA558770 | 180576 | 234 | 4.61809 | 10.8063306 | Pestivirus bovis | 3052619 | Viruses | Viruses | 128 | 3.38e-25 | NTclustered | gi|2040746277|gb|MT654137.1| | 11099 | g178571 | i0 | 98.611 | 13.5042735042735 | 72 | 1 | 63 | 0 | 160 | 231 | 4736 | 4665 | Bovine viral diarrhea virus 1 strain 20-8536, complete genome | blastn | 3160 | 128 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 19665849 | 19665849 | PRJNA558770_P_NODE_21656_length_433_cov_5.967337_g19754_i0 | PRJNA558770 | 21656 | 433 | 5.967337 | 25.83856921 | Pestivirus bovis | 3052619 | Viruses | Viruses | 451 | 3.5300000000000004e-122 | NTclustered | gi|2731951075|gb|PP770551.1| | 11099 | g19754 | i0 | 96.35 | 64.5889145496536 | 274 | 10 | 63 | 0 | 1 | 274 | 8779 | 8506 | Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome | blastn | 27967 | 451 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 19665903 | 19665903 | PRJNA558770_P_NODE_21896_length_432_cov_3.720403_g19992_i0 | PRJNA558770 | 21896 | 432 | 3.720403 | 16.07214096 | Pestivirus bovis | 3052619 | Viruses | Viruses | 455 | 2.72e-123 | NTclustered | gi|77799875|dbj|AB111961.2| | 233883 | g19992 | i0 | 96.703 | 63.525462962963 | 273 | 9 | 63 | 0 | 1 | 273 | 6909 | 7181 | Bovine viral diarrhea virus 799ncp gene for poryprotein, partai cds, strain: 799ncp | blastn | 27443 | 455 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 19667706 | 19667706 | PRJNA558770_P_NODE_3456_length_844_cov_11.394314_g2497_i0 | PRJNA558770 | 3456 | 844 | 11.394314 | 96.16801016 | Pestivirus bovis | 3052619 | Viruses | Viruses | 821 | 0 | NTclustered | gi|1129880093|gb|KX170414.1| | 11099 | g2497 | i0 | 99.555 | 81.5035545023697 | 449 | 2 | 53 | 0 | 382 | 830 | 1310 | 862 | Bovine viral diarrhea virus 1 isolate V099 NS2 gene, partial cds | blastn | 68789 | 821 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 19668121 | 19668121 | PRJNA558770_P_NODE_388316_length_182_cov_32.197279_g386311_i0 | PRJNA558770 | 388316 | 182 | 32.197279 | 58.59904778 | Pestivirus bovis | 3052619 | Viruses | Viruses | 200 | 5.219999999999998e-47 | NTclustered | gi|800924312|gb|KP941581.1| | 11099 | g386311 | i0 | 95.968 | 81.532967032967 | 124 | 3 | 100 | 1 | 61 | 182 | 5552 | 5429 | Bovine viral diarrhea virus 1 strain USMARC-51998 polyprotein gene, complete cds | blastn | 14839 | 200 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 19668343 | 19668343 | PRJNA558770_P_NODE_397596_length_150_cov_1.608696_g395591_i0 | PRJNA558770 | 397596 | 150 | 1.608696 | 2.413044 | Pestivirus bovis | 3052619 | Viruses | Viruses | 257 | 2.41e-64 | NTclustered | gi|1129880093|gb|KX170414.1| | 11099 | g395591 | i0 | 97.973 | 71.6866666666667 | 148 | 3 | 99 | 0 | 1 | 148 | 170 | 23 | Bovine viral diarrhea virus 1 isolate V099 NS2 gene, partial cds | blastn | 10753 | 257 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 19669008 | 19669008 | PRJNA558770_P_NODE_65836_length_257_cov_1.747748_g63831_i0 | PRJNA558770 | 65836 | 257 | 1.747748 | 4.49171236 | Pestivirus tauri | 3052626 | Viruses | Viruses | 182 | 2.86e-41 | NTclustered | gi|1129879665|gb|KX170200.1| | 54315 | g63831 | i0 | 100 | 52.6848249027237 | 98 | 0 | 38 | 0 | 160 | 257 | 42 | 139 | Bovine viral diarrhea virus 2 isolate V019 Erns gene, partial cds | blastn | 13540 | 182 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus tauri | ||
| 19669104 | 19669104 | PRJNA558770_P_NODE_69616_length_249_cov_4.626168_g67611_i0 | PRJNA558770 | 69616 | 249 | 4.626168 | 11.51915832 | Pestivirus bovis | 3052619 | Viruses | Viruses | 134 | 7.82e-27 | NTclustered | gi|1407719716|gb|MH379638.1| | 11099 | g67611 | i0 | 93.333 | 15.5502008032129 | 90 | 6 | 36 | 0 | 160 | 249 | 1748 | 1659 | Bovine viral diarrhea virus 1 isolate Ho916, complete genome | blastn | 3872 | 134 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20255149 | 20255149 | PRJNA558770_P_NODE_118416_length_234_cov_9.407035_g116411_i0 | PRJNA558770 | 118416 | 234 | 9.407035 | 22.0124619 | Pestivirus | 11095 | Viruses | Viruses | 248 | 2.49e-61 | NTclustered | gi|2858850717|gb|PQ613792.1| | 11099 | g116411 | i0 | 94.41 | 92.6880341880342 | 161 | 9 | 100 | 0 | 1 | 161 | 2289 | 2129 | Bovine viral diarrhea virus 1 isolate USMARC/PI-91-21/MDBK polyprotein gene, complete cds | blastn | 21689 | 248 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20255413 | 20255413 | PRJNA558770_P_NODE_1696_length_1075_cov_11.025000_g1080_i0 | PRJNA558770 | 1696 | 1075 | 11.025 | 118.51875 | Pestivirus | 11095 | Viruses | Viruses | 1570 | 0 | NTclustered | gi|2789676|gb|AF041040.1|AF041040 | 11099 | g1080 | i0 | 95.085 | 89.433488372093 | 997 | 49 | 99 | 0 | 79 | 1075 | 1149 | 2145 | Pestivirus type 1 polyprotein gene, complete cds | blastn | 96141 | 1570 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20255705 | 20255705 | PRJNA558770_P_NODE_225776_length_234_cov_2.924623_g223771_i0 | PRJNA558770 | 225776 | 234 | 2.924623 | 6.84361782 | Pestivirus | 11095 | Viruses | Viruses | 150 | 7.22e-32 | NTclustered | gi|2858850691|gb|PQ613779.1| | 11099 | g223771 | i0 | 96.667 | 61.4786324786325 | 90 | 3 | 38 | 0 | 1 | 90 | 5366 | 5455 | Bovine viral diarrhea virus 1 isolate USMARC/PI-86-21/Serum polyprotein gene, complete cds | blastn | 14386 | 150 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20256187 | 20256187 | PRJNA558770_P_NODE_32256_length_380_cov_5.750725_g30276_i0 | PRJNA558770 | 32256 | 380 | 5.750725 | 21.852755 | Pestivirus | 11095 | Viruses | Viruses | 351 | 3.19e-92 | NTclustered | gi|77799875|dbj|AB111961.2| | 233883 | g30276 | i0 | 95.455 | 101.618421052632 | 220 | 10 | 100 | 0 | 161 | 380 | 988 | 1207 | Bovine viral diarrhea virus 799ncp gene for poryprotein, partai cds, strain: 799ncp | blastn | 38615 | 351 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20256732 | 20256732 | PRJNA558770_P_NODE_6996_length_656_cov_7.882448_g5638_i0 | PRJNA558770 | 6996 | 656 | 7.882448 | 51.70885888 | Pestivirus | 11095 | Viruses | Viruses | 503 | 1.5e-137 | NTclustered | gi|887497285|gb|KR029825.1| | 11099 | g5638 | i0 | 90.052 | 81.5289634146341 | 382 | 27 | 88 | 5 | 286 | 656 | 3516 | 3897 | Bovine viral diarrhea virus 1 isolate Egy/Ismailia/2014, complete genome | blastn | 53483 | 505 | 0.996039603960396 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20940400 | 20940400 | PRJNA558770_P_NODE_15657_length_488_cov_15.311258_g13884_i0 | PRJNA558770 | 15657 | 488 | 15.311258 | 74.71893904 | Pestivirus bovis | 3052619 | Viruses | Viruses | 427 | 6.7699999999999985e-115 | NTclustered | gi|2858850729|gb|PQ613798.1| | 11099 | g13884 | i0 | 98.354 | 58.1393442622951 | 243 | 4 | 69 | 0 | 1 | 243 | 10781 | 11023 | Bovine viral diarrhea virus 1 isolate USMARC/PI-92-21/Serum polyprotein gene, complete cds | blastn | 28372 | 427 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;