RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA558770" and tax_phylum = "Fidelibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA558770 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31089976 31089976 PRJNA558770_P_NODE_274815_length_234_cov_1.819095_g272810_i0 PRJNA558770 274815 234 1.819095 4.2566823 Fidelibacterota bacterium 2026760 Bacteria Bacteria 40.4 0.0278   NR MAV64344.1 2026760 g272810 i0 80 0.641025641025641 25 5 32.1 0 234 160 7 31 MAV64344.1 twin-arginine translocase TatA/TatE family subunit [Fidelibacterota bacterium] diamond 150 40.4 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
32070415 32070415 PRJNA558770_P_NODE_24418_length_418_cov_23.227154_g22486_i0 PRJNA558770 24418 418 23.227154 97.08950372 Fidelibacterota bacterium 2026760 Bacteria Bacteria 45.8 0.0198   NR MCF7801256.1 2026760 g22486 i0 37.3 0.423444976076555 59 36 42.3 1 168 344 894 951 MCF7801256.1 DNA polymerase III subunit alpha [Fidelibacterota bacterium] diamond 177 45.8 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;