RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA558770" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA558770 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27300177 27300177 PRJNA558770_P_NODE_222743_length_234_cov_3.015075_g220738_i0 PRJNA558770 222743 234 3.015075 7.0552755 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 45.8 0.00274   NR NRH21058.1 2044595 g220738 i0 76 0.320512820512821 25 6 32.1 0 234 160 205 229 NRH21058.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 75 45.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
27742595 27742595 PRJNA558770_P_NODE_162684_length_234_cov_5.592965_g160679_i0 PRJNA558770 162684 234 5.592965 13.0875381 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 47 4.18e-4   NR MBP7822891.1 2044595 g160679 i0 79.2 0.615384615384615 24 5 30.8 0 75 4 40 63 MBP7822891.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 144 47 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29604795 29604795 PRJNA558770_P_NODE_168970_length_234_cov_5.226131_g166965_i0 PRJNA558770 168970 234 5.226131 12.22914654 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 55.8 6.9e-7   NR MBP7823286.1 2044595 g166965 i0 33.3 1.15384615384615 90 43 93.6 1 221 3 147 236 MBP7823286.1 methionyl-tRNA formyltransferase [Candidatus Altimarinota bacterium] diamond 270 55.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30236865 30236865 PRJNA558770_P_NODE_164672_length_234_cov_5.472362_g162667_i0 PRJNA558770 164672 234 5.472362 12.80532708 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 43.9 0.0129   NR MCD5380837.1 2044595 g162667 i0 79.2 0.615384615384615 24 5 30.8 0 161 232 642 665 MCD5380837.1 type IV secretion system DNA-binding domain-containing protein [Candidatus Altimarinota bacterium] diamond 144 43.9 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31247920 31247920 PRJNA558770_P_NODE_106955_length_234_cov_11.085427_g104950_i0 PRJNA558770 106955 234 11.085427 25.93989918 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 50.4 4.31e-5   NR MBP7806405.1 2044595 g104950 i0 95.8 0.923076923076923 24 1 30.8 0 73 2 28 51 MBP7806405.1 50S ribosomal protein L25 [Candidatus Altimarinota bacterium] diamond 216 50.4 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;