RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA558770", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

  • Metazoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA558770 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1814586 1814586 PRJNA558770_P_NODE_186582_length_234_cov_4.331658_g184577_i0 PRJNA558770 186582 234 4.331658 10.13607972 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.021   NTclustered gi|687602335|emb|LK529465.1| 57078 g184577 i0 100 0.239316239316239 28 0 12 0 45 72 67 40 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_scaffold0128391 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
1815322 1815322 PRJNA558770_P_NODE_228562_length_234_cov_2.849246_g226557_i0 PRJNA558770 228562 234 2.849246 6.66723564 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 135 2.02e-27   NTclustered gi|1124902734|gb|AY812498.2| 6182 g226557 i0 98.684 58.6495726495726 76 1 32 0 1 76 1144 1069 Schistosoma japonicum SJCHGC01615 protein mRNA, partial cds blastn 13724 135 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
7508195 7508195 PRJNA558770_P_NODE_73166_length_242_cov_82.695652_g71161_i0 PRJNA558770 73166 242 82.695652 200.12347784 Metazoa 33208 Platyhelminthes Platyhelminthes 431 2.4e-116   NTclustered gi|1126394097|gb|AY813297.2| 6182 g71161 i0 99.576 37.900826446281 236 1 98 0 7 242 89 324 Schistosoma japonicum clone SJCHGC01483 unknown mRNA, partial cds blastn 9172 431 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
28278883 28278883 PRJNA558770_P_NODE_9146_length_598_cov_4.717584_g7639_i0 PRJNA558770 9146 598 4.7175840000000004 28.21115232 Cichlidogyrus casuarinus 1844966 Platyhelminthes Platyhelminthes 45.1 0.0103   NR KAL3308545.1 1844966 g7639 i0 71.4 0.140468227424749 28 5 12.5 1 75 1 1 28 KAL3308545.1 hypothetical protein Ciccas_012921 [Cichlidogyrus casuarinus] diamond 84 45.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Dactylogyridea Ancyrocephalidae Cichlidogyrus Cichlidogyrus casuarinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;