RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA558770", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA558770 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
541239 541239 PRJNA558770_P_NODE_345941_length_233_cov_2.247475_g343936_i0 PRJNA558770 345941 233 2.247475 5.23661675 Patiria miniata 46514 Echinodermata other_Eukaryota 58.4 4.48e-4   NTclustered gi|1944869650|ref|XM_038199402.1| 46514 g343936 i0 97.059 0.291845493562232 34 1 15 0 8 41 3735 3768 PREDICTED: Patiria miniata serine/threonine-protein phosphatase with EF-hands 2-like (LOC119727508), transcript variant X1, mRNA blastn 68 58.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
17707459 17707459 PRJNA558770_P_NODE_285034_length_234_cov_1.653266_g283029_i0 PRJNA558770 285034 234 1.653266 3.86864244 Opisthokonta 33154 Echinodermata other_Eukaryota 82.4 2.67e-11   NTclustered gi|1752375604|ref|XM_030991507.1| 7668 g283029 i0 91.525 9.61965811965812 59 5 25 0 5 63 4923 4865 PREDICTED: Strongylocentrotus purpuratus pre-mRNA-processing-splicing factor 8 (LOC577459), mRNA blastn 2251 82.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
20941743 20941743 PRJNA558770_P_NODE_225377_length_234_cov_2.934673_g223372_i0 PRJNA558770 225377 234 2.934673 6.86713482 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 52.8 0.021   NTclustered gi|1752341541|ref|XR_004062032.1| 7668 g223372 i0 100 0.717948717948718 28 0 12 0 37 64 294 321 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC115919835 (LOC115919835), ncRNA blastn 168 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;