RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA558770", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA558770 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27268493 27268493 PRJNA558770_P_NODE_187863_length_234_cov_4.276382_g185858_i0 PRJNA558770 187863 234 4.276382 10.00673388 Kappamyces sp. JEL 2040833 Fungi Fungi 52.4 1.39e-5   NR KAJ3372350.1 2724210 g185858 i0 95.8 0.307692307692308 24 1 30.8 0 234 163 120 143 KAJ3372350.1 hypothetical protein HDU91_003960 [Kappamyces sp. JEL0680] diamond 72 52.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Kappamycetaceae Kappamyces Kappamyces sp. JEL0680
28373682 28373682 PRJNA558770_P_NODE_176846_length_234_cov_4.798995_g174841_i0 PRJNA558770 176846 234 4.798995 11.2296483 Boothiomyces macroporosus 261099 Fungi Fungi 46.2 0.00201   NR KAJ3262240.1 261099 g174841 i0 83.3 0.307692307692308 24 4 30.8 0 234 163 154 177 KAJ3262240.1 hypothetical protein HK103_002653 [Boothiomyces macroporosus] diamond 72 46.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Terramycetaceae Boothiomyces Boothiomyces macroporosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;