RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA558770", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA558770 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
541465 541465 PRJNA558770_P_NODE_380101_length_217_cov_9.417582_g378096_i0 PRJNA558770 380101 217 9.417582 20.43615294 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 348 2.1800000000000002e-91   NTclustered gi|88792583|gb|DQ386164.1| 372086 g378096 i0 96.682 91.6958525345622 211 4 96 1 10 217 1458 1668 Paracercomonas marina 28S ribosomal RNA gene, partial sequence blastn 19898 348 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
3681340 3681340 PRJNA558770_P_NODE_49143_length_306_cov_11.007380_g47141_i0 PRJNA558770 49143 306 11.00738 33.6825828 Cyphoderiidae 178373 SAR_Eukaryotes SAR_Eukaryotes 215 3.44e-51   NTclustered gi|283777540|gb|GU228854.1| 707164 g47141 i0 97.6 40.9019607843137 125 3 41 0 182 306 383 259 Cyphoderia littoralis isolate Galata 1 small subunit ribosomal RNA gene, partial sequence blastn 12516 215 1 Eukaryota Sar   Cercozoa Imbricatea Euglyphida Cyphoderiidae Cyphoderia Cyphoderia littoralis
8195422 8195422 PRJNA558770_P_NODE_6547_length_672_cov_9.894819_g5231_i0 PRJNA558770 6547 672 9.894819 66.49318368 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 257 1.32e-63   NTclustered gi|88792583|gb|DQ386164.1| 372086 g5231 i0 99.296 41.9851190476191 142 1 21 0 420 561 1668 1527 Paracercomonas marina 28S ribosomal RNA gene, partial sequence blastn 28214 257 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
22219801 22219801 PRJNA558770_P_NODE_72398_length_244_cov_3.655502_g70393_i0 PRJNA558770 72398 244 3.655502 8.91942488 Cercomonas sp. 1979794 SAR_Eukaryotes SAR_Eukaryotes 248 2.6199999999999997e-61   NTclustered gi|2651357797|gb|PP174310.1| 1979794 g70393 i0 85.156 99.5819672131148 256 22 100 13 1 244 3704 3955 Cercomonas sp. isolate 1-1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24298 248 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;