RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA558770", tax_clade = "SAR92 clade" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 1 ✖

tax_kingdom 1

tax_clade 1

  • SAR92 clade · 1 ✖

bioproject 1

  • PRJNA558770 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29051034 29051034 PRJNA558770_P_NODE_151988_length_234_cov_6.276382_g149983_i0 PRJNA558770 151988 234 6.276382 14.68673388 Bacteria 2 Bacteria Bacteria 44.7 0.00637   NR KRO90218.1 1655626 g149983 i0 79.2 3.6025641025641 24 5 30.8 0 73 2 206 229 KRO90218.1 MAG: elongation factor Ts [SAR92 bacterium BACL26 MAG-121220-bin70] diamond 843 44.7 1 Bacteria SAR92 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Porticoccaceae   SAR92 bacterium BACL26 MAG-121220-bin70

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;