RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA558770", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 7 ✖

bioproject 1

  • PRJNA558770 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
540173 540173 PRJNA558770_P_NODE_261241_length_234_cov_2.075377_g259236_i0 PRJNA558770 261241 234 2.075377 4.85638218 Heterodera latipons 157856 Nematoda Nematoda 124 4.38e-24   NTclustered gi|197260344|gb|FJ151163.1| 157856 g259236 i0 97.26 0.311965811965812 73 2 31 0 4 76 106 178 Heterodera latipons heat shock protein 90 (hsp-90) gene, partial sequence blastn 73 124 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera latipons
4367127 4367127 PRJNA558770_P_NODE_236344_length_234_cov_2.633166_g234339_i0 PRJNA558770 236344 234 2.633166 6.16160844 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.021   NTclustered gi|687022745|emb|LM525659.1| 174720 g234339 i0 100 0.11965811965812 28 0 12 0 207 234 44936 44909 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000062 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
7507407 7507407 PRJNA558770_P_NODE_260266_length_234_cov_2.090452_g258261_i0 PRJNA558770 260266 234 2.090452 4.89165768 Strongyloides 6247 Nematoda Nematoda 52.8 0.021   NTclustered gi|1376153927|ref|XM_024645697.1| 34506 g258261 i0 96.774 0.264957264957265 31 1 13 0 14 44 287 317 Strongyloides ratti Kyphoscoliosis peptidase (SRAE_X000114800), partial mRNA blastn 62 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
13296454 13296454 PRJNA558770_P_NODE_60291_length_269_cov_3.478632_g58286_i0 PRJNA558770 60291 269 3.478632 9.35752008 Pristionchus pacificus 54126 Nematoda Nematoda 62.1 4.09e-5   NTclustered gi|33621861|gb|AY319931.1| 54126 g58286 i0 97.222 0.24907063197026 36 1 13 0 4 39 101487 101522 Pristionchus pacificus BAC PPBAC-7E22 sequence blastn 67 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
17707313 17707313 PRJNA558770_P_NODE_259674_length_234_cov_2.105528_g257669_i0 PRJNA558770 259674 234 2.105528 4.92693552 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 58.4 4.5e-4   NTclustered gi|687865701|emb|LK927588.1| 6239 g257669 i0 97.059 2.03418803418803 34 1 15 0 29 62 178134 178167 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000005 blastn 476 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
20943369 20943369 PRJNA558770_P_NODE_340337_length_233_cov_3.651515_g338332_i0 PRJNA558770 340337 233 3.651515 8.50802995 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.021   NTclustered gi|687022657|emb|LM525571.1| 174720 g338332 i0 100 0.120171673819742 28 0 12 0 198 225 3914 3887 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000012 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
30742425 30742425 PRJNA558770_P_NODE_397294_length_151_cov_3.465517_g395289_i0 PRJNA558770 397294 151 3.465517 5.23293067 Gnathostoma spinigerum 75299 Nematoda Nematoda 94.4 5.509999999999999e-24   NR MFH4985130.1 75299 g395289 i0 84.4 0.894039735099338 45 7 89.4 0 150 16 23 67 MFH4985130.1 hypothetical protein [Gnathostoma spinigerum] diamond 135 94.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;