RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA558770", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 9 ✖

tax_phylum 1

tax_clade 1

  • Metamonada · 9 ✖

bioproject 1

  • PRJNA558770 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3093310 3093310 PRJNA558770_P_NODE_6003_length_692_cov_7.993912_g4740_i0 PRJNA558770 6003 692 7.993912 55.31787104 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 470 1.61e-127   NTclustered gi|2274983416|gb|OP038912.1| 5725 g4740 i0 92.901 9.74277456647399 324 22 68 1 1 324 1679 1357 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 6742 470 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
6232951 6232951 PRJNA558770_P_NODE_25785_length_412_cov_3.660477_g23844_i0 PRJNA558770 25785 412 3.660477 15.08116524 Tritrichomonas 5723 Parabasalia other_Eukaryota 167 1.36e-36   NTclustered gi|2263042901|gb|ON907819.1| 1915356 g23844 i0 98.925 49.5776699029126 93 1 59 0 161 253 731 639 Tritrichomonas musculus isolate LT small subunit ribosomal RNA gene, partial sequence blastn 20426 167 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus
10745613 10745613 PRJNA558770_P_NODE_35589_length_358_cov_26.065015_g33603_i0 PRJNA558770 35589 358 26.065015 93.3127537 Tritrichomonas muris 5726 Parabasalia other_Eukaryota 636 7.36e-178   NTclustered gi|62466089|gb|AY886846.1| 5726 g33603 i0 98.88 98.2960893854749 357 3 99 1 1 356 1351 995 Tritrichomonas muris clone 1-6 16S-like ribosomal RNA gene, partial sequence blastn 35190 636 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas muris
12018503 12018503 PRJNA558770_P_NODE_21790_length_432_cov_11.143577_g19887_i0 PRJNA558770 21790 432 11.143577 48.14025264 Tritrichomonas muris 5726 Parabasalia other_Eukaryota 342 2.2099999999999998e-89   NTclustered gi|62466089|gb|AY886846.1| 5726 g19887 i0 100 62.587962962963 185 0 95 0 1 185 424 240 Tritrichomonas muris clone 1-6 16S-like ribosomal RNA gene, partial sequence blastn 27038 342 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas muris
15156811 15156811 PRJNA558770_P_NODE_15612_length_489_cov_5.755507_g13839_i0 PRJNA558770 15612 489 5.755507 28.14442923 Tritrichomonas 5723 Parabasalia other_Eukaryota 167 1.63e-36   NTclustered gi|2263042901|gb|ON907819.1| 1915356 g13839 i0 98.925 43.2044989775051 93 1 64 0 160 252 639 731 Tritrichomonas musculus isolate LT small subunit ribosomal RNA gene, partial sequence blastn 21127 167 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus
18389792 18389792 PRJNA558770_P_NODE_1375_length_1174_cov_11.395961_g830_i0 PRJNA558770 1375 1174 11.395961 133.78858214 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 1144 0   NTclustered gi|2274983416|gb|OP038912.1| 5725 g830 i0 92.704 27.2870528109029 795 35 98 7 390 1174 1272 491 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 32035 1144 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
19669280 19669280 PRJNA558770_P_NODE_7696_length_634_cov_8.544240_g6298_i0 PRJNA558770 7696 634 8.54424 54.1704816 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 521 3.989999999999999e-143   NTclustered gi|2274983416|gb|OP038912.1| 5725 g6298 i0 92.162 10.7066246056782 370 28 82 1 1 370 1679 1311 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 6788 521 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
30204999 30204999 PRJNA558770_P_NODE_210072_length_234_cov_3.412060_g208067_i0 PRJNA558770 210072 234 3.41206 7.9842204 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 51.6 2.55e-5   NR XP_068368108.1 1144522 g208067 i0 100 0.615384615384615 24 0 30.8 0 4 75 66 89 XP_068368108.1 Elongation factor 2 [Tritrichomonas foetus] diamond 144 51.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31215944 31215944 PRJNA558770_P_NODE_242855_length_234_cov_2.472362_g240850_i0 PRJNA558770 242855 234 2.472362 5.78532708 Tritrichomonas musculus 1915356 Parabasalia other_Eukaryota 48.5 2.71e-4   NR KAK8834655.1 1915356 g240850 i0 76 0.320512820512821 25 6 32.1 0 232 158 103 127 KAK8834655.1 hypothetical protein M9Y10_026543 [Tritrichomonas musculus] diamond 75 48.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;