RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA558770" and tax_clade = "Human papillomavirus types"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Human papillomavirus types · 4 ✖

bioproject 1

  • PRJNA558770 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12607601 12607601 PRJNA558770_P_NODE_119930_length_234_cov_9.221106_g117925_i0 PRJNA558770 119930 234 9.221106 21.57738804 Betapapillomavirus 333922 Viruses Viruses 141 4.35e-29   NTclustered gi|1559669520|gb|MH777361.2| 10566 g117925 i0 100 1.27350427350427 76 0 64 0 1 76 4362 4437 MAG: Human papillomavirus isolate HPV-mSK_222, complete genome blastn 298 141 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
15157719 15157719 PRJNA558770_P_NODE_337392_length_233_cov_4.383838_g335387_i0 PRJNA558770 337392 233 4.383838 10.21434254 Betapapillomavirus 333922 Viruses Viruses 135 2.0100000000000003e-27   NTclustered gi|1559669520|gb|MH777361.2| 10566 g335387 i0 98.684 1.31330472103004 76 1 65 0 1 76 3728 3803 MAG: Human papillomavirus isolate HPV-mSK_222, complete genome blastn 306 135 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
20255609 20255609 PRJNA558770_P_NODE_20776_length_438_cov_8.411911_g18886_i0 PRJNA558770 20776 438 8.411911 36.84417018 Betapapillomavirus 333922 Viruses Viruses 213 1.83e-50   NTclustered gi|1559669520|gb|MH777361.2| 10566 g18886 i0 98.347 5.57077625570776 121 2 62 0 160 280 5365 5485 MAG: Human papillomavirus isolate HPV-mSK_222, complete genome blastn 2440 213 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
24082205 24082205 PRJNA558770_P_NODE_8739_length_607_cov_10.375874_g7257_i0 PRJNA558770 8739 607 10.375874 62.98155518 Betapapillomavirus 333922 Viruses Viruses 213 2.61e-50   NTclustered gi|1559669520|gb|MH777361.2| 10566 g7257 i0 98.347 6.84349258649094 121 2 71 0 159 279 5485 5365 MAG: Human papillomavirus isolate HPV-mSK_222, complete genome blastn 4154 213 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;