RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA558770", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA558770 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5645685 5645685 PRJNA558770_P_NODE_397005_length_152_cov_16.076923_g395000_i0 PRJNA558770 397005 152 16.076923 24.43692296 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 211 1.94e-50   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g395000 i0 92.053 3.92105263157895 151 10 99 2 3 152 806560 806709 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 596 211 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
8191600 8191600 PRJNA558770_P_NODE_179007_length_234_cov_4.693467_g177002_i0 PRJNA558770 179007 234 4.693467 10.98271278 Rhodothermus marinus 29549 Bacteria Bacteria 86.1 2.07e-12   NTclustered gi|345113873|gb|CP003030.1| 762570 g177002 i0 94.545 3.17521367521368 55 3 24 0 1 55 27825 27771 Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201, complete sequence blastn 743 86.1 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
9466910 9466910 PRJNA558770_P_NODE_156128_length_234_cov_6.005025_g154123_i0 PRJNA558770 156128 234 6.005025 14.0517585 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 86.1 2.07e-12   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g154123 i0 88.571 0.299145299145299 70 8 30 0 6 75 35339 35270 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 70 86.1 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
12021001 12021001 PRJNA558770_P_NODE_41690_length_329_cov_9.336735_g39692_i0 PRJNA558770 41690 329 9.336735 30.71785815 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 169 2.95e-37   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g39692 i0 84.615 34.4711246200608 169 26 51 0 160 328 1309241 1309409 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 11341 169 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
13883331 13883331 PRJNA558770_P_NODE_267191_length_234_cov_1.959799_g265186_i0 PRJNA558770 267191 234 1.959799 4.58592966 Pseudomonadati 3379134 Bacteria Bacteria 99 2.65e-16   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g265186 i0 90.541 24.8504273504273 74 7 32 0 3 76 2065488 2065415 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 5815 99 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
20942376 20942376 PRJNA558770_P_NODE_26337_length_409_cov_8.489305_g24389_i0 PRJNA558770 26337 409 8.489305 34.72125745 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 451 3.31e-122   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g24389 i0 87.692 447.486552567237 390 45 95 3 22 408 806715 807104 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 183022 451 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;