RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA558770", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA558770 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29857751 29857751 PRJNA558770_P_NODE_395711_length_158_cov_2.211382_g393706_i0 PRJNA558770 395711 158 2.211382 3.49398356 Fibrobacter sp. 35828 Bacteria Bacteria 43.5 0.00446   NR NLW32955.1 35828 g393706 i0 89.5 0.360759493670886 19 2 36.1 0 92 148 1 19 NLW32955.1 phosphoesterase [Fibrobacter sp.] diamond 57 43.5 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
32716577 32716577 PRJNA558770_P_NODE_255140_length_234_cov_2.195980_g253135_i0 PRJNA558770 255140 234 2.19598 5.1385932 FCB group 1783270 Bacteria Bacteria 43.9 0.0111   NR WP_073422828.1 1896206 g253135 i0 90.9 2.02564102564103 22 2 28.2 0 72 7 49 70 WP_073422828.1 sugar transferase [Fibrobacter sp. UWB7] diamond 474 43.9 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWB7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;