RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA558770", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA558770 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19666901 19666901 PRJNA558770_P_NODE_277656_length_234_cov_1.768844_g275651_i0 PRJNA558770 277656 234 1.768844 4.13909496 Prosthecochloris sp. CIB 2401 1868325 Bacteria Bacteria 60.2 1.25e-4   NTclustered gi|1044515116|gb|CP016432.1| 1868325 g275651 i0 100 1.03846153846154 32 0 14 0 175 206 1395067 1395036 Prosthecochloris sp. CIB 2401 chromosome, complete genome blastn 243 60.2 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp. CIB 2401
23492718 23492718 PRJNA558770_P_NODE_267919_length_234_cov_1.949749_g265914_i0 PRJNA558770 267919 234 1.949749 4.56241266 Prosthecochloris sp. CIB 2401 1868325 Bacteria Bacteria 60.2 1.25e-4   NTclustered gi|1044515116|gb|CP016432.1| 1868325 g265914 i0 88 0.213675213675214 50 6 21 0 164 213 1940038 1940087 Prosthecochloris sp. CIB 2401 chromosome, complete genome blastn 50 60.2 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp. CIB 2401
32527716 32527716 PRJNA558770_P_NODE_138499_length_234_cov_7.316583_g136494_i0 PRJNA558770 138499 234 7.316583 17.12080422 Chlorobiaceae 191412 Bacteria Bacteria 51.2 3.39e-5   NR MCW8796254.1 1095 g136494 i0 87.5 2.11538461538462 24 3 30.8 0 2 73 115 138 MCW8796254.1 HsdR family type I site-specific deoxyribonuclease [Chlorobium sp.] diamond 495 51.2 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;