RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA558770", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA558770 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29226521 29226521 PRJNA558770_P_NODE_199309_length_234_cov_3.809045_g197304_i0 PRJNA558770 199309 234 3.809045 8.9131653 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 47.8 5.72e-4   NR MBI2422945.1 2030809 g197304 i0 84 0.320512820512821 25 4 32.1 0 2 76 332 356 MBI2422945.1 protein kinase [Candidatus Hydrogenedentota bacterium] diamond 75 47.8 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
32891343 32891343 PRJNA558770_P_NODE_210080_length_234_cov_3.412060_g208075_i0 PRJNA558770 210080 234 3.41206 7.9842204 Candidatus Hydrogenedentes bacterium ADurb.Bin179 1852849 Bacteria Bacteria 45.1 0.00475   NR OQB31089.1 1852849 g208075 i0 87 0.294871794871795 23 3 29.5 0 6 74 5 27 OQB31089.1 MAG: hypothetical protein BWY09_02937 [Candidatus Hydrogenedentes bacterium ADurb.Bin179] diamond 69 45.1 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentes bacterium ADurb.Bin179

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;