RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA558770", tax_clade = "Discoba" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 7 ✖

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJNA558770 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6919771 6919771 PRJNA558770_P_NODE_391926_length_170_cov_2.592593_g389921_i0 PRJNA558770 391926 170 2.592593 4.4074081 uncultured Sphenomonadales 315795 Euglenozoa other_Eukaryota 171 3.7599999999999997e-38   NTclustered gi|60687330|gb|AY821957.1| 315795 g389921 i0 97.959 45.7588235294118 98 2 99 0 1 98 767 670 Uncultured Sphenomonadales clone CH1_S2_16 small subunit ribosomal RNA gene, partial sequence blastn 7779 171 1 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida     uncultured Sphenomonadales
8193116 8193116 PRJNA558770_P_NODE_262647_length_234_cov_2.045226_g260642_i0 PRJNA558770 262647 234 2.045226 4.78582884 Porcisia hertigi 2761500 Euglenozoa other_Eukaryota 54.7 0.006   NTclustered gi|2794852994|ref|XM_067896746.1| 2761500 g260642 i0 88.889 0.192307692307692 45 4 19 1 160 203 781 825 Porcisia hertigi uncharacterized protein (JKF63_00695), partial mRNA blastn 45 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Porcisia Porcisia hertigi
8782917 8782917 PRJNA558770_P_NODE_46587_length_315_cov_10.050000_g44587_i0 PRJNA558770 46587 315 10.05 31.6575 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 191 5.99e-44   NTclustered gi|1658007|gb|U73613.1|LBU73613 5660 g44587 i0 96.522 80.1460317460318 115 4 37 0 37 151 159 45 Leishmania braziliensis 24S alpha ribosomal RNA gene, partial sequence blastn 25246 191 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania braziliensis
9468092 9468092 PRJNA558770_P_NODE_217088_length_234_cov_3.180905_g215083_i0 PRJNA558770 217088 234 3.180905 7.4433177 Trypanosoma congolense 5692 Euglenozoa other_Eukaryota 56.5 0.002   NTclustered gi|342183762|emb|HE575323.1| 1068625 g215083 i0 100 0.128205128205128 30 0 13 0 195 224 527912 527883 Trypanosoma congolense IL3000 annotated genomic contig, chromosome 10 blastn 30 56.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma congolense
11332031 11332031 PRJNA558770_P_NODE_176789_length_234_cov_4.798995_g174784_i0 PRJNA558770 176789 234 4.798995 11.2296483 Entosiphon 101492 Euglenozoa other_Eukaryota 95.3 3.43e-15   NTclustered gi|41400272|gb|AY425008.1| 259048 g174784 i0 90.411 1.86752136752137 73 5 31 2 4 75 980 1051 Entosiphon sp. TCS-2003 18S ribosomal RNA gene, partial sequence blastn 437 95.3 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sp. TCS 2003
15843275 15843275 PRJNA558770_P_NODE_279093_length_234_cov_1.748744_g277088_i0 PRJNA558770 279093 234 1.748744 4.09206096 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.021   NTclustered gi|1031970232|gb|CP015666.1| 85057 g277088 i0 100 0.11965811965812 28 0 12 0 28 55 870122 870149 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI16, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
20943676 20943676 PRJNA558770_P_NODE_381517_length_211_cov_5.357955_g379512_i0 PRJNA558770 381517 211 5.357955 11.30528505 Entosiphon sp. 1921133 Euglenozoa other_Eukaryota 243 1.02e-59   NTclustered gi|1547024950|gb|MK213406.1| 1921133 g379512 i0 87.619 6.43601895734597 210 24 99 2 1 209 1028 820 Entosiphon sp. strain ESC small subunit ribosomal RNA, partial sequence blastn 1358 243 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;